HHsearch results for GI: 254781161 and protein with PDBid: 1r8g_A

>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A
Probab=100.00  E-value=0  Score=403.91  Aligned_cols=354  Identities=14%  Similarity=0.127  Sum_probs=298.8

Q ss_pred             CCCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCCCCCEEEC-CCCCEEE
Q ss_conf             798720355867776538747657848711223499999975552488646127841023345688703413-5420242
Q gi|254781161|r   24 GIKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLAWKEIMDKGNIIGLANPLSKAGISIE-PGGQLEL  102 (457)
Q Consensus        24 g~k~~~~~~IG~E~E~flvd~~~~~p~~~~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~l~~~~~~~~it~e-p~~qlE~  102 (457)
                      +.+.++.++||+|+|+|+||+++..+++.     +.++|+.+.+..                  .+..|+.| +.+|||+
T Consensus         5 ~f~~~~~~tiG~E~E~~lVD~~~~~~~~~-----~~~vl~~~~~~~------------------~~~~i~~El~~~qlEl   61 (372)
T 1r8g_A            5 DFHVSEPFTLGIELEMQVVNPPGYDLSQD-----SSMLIDAVKNKI------------------TAGEVKHDITESMLEL   61 (372)
T ss_dssp             CCCCCCTTCEEEEEEEEEEETTTTEECSC-----CHHHHTTTSSSC------------------SSSEEEECSSSSEEEE
T ss_pred             CCCCCCCCEEEEEEEEEEECCCCCCCCCC-----HHHHHHHHHCCC------------------CCCCEEECCCCCEEEE
T ss_conf             88999998058887653367998776775-----699999732324------------------7985444278727997


Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             01101015677888888788878742103873421056878884542000001356666654321126788876313404
Q gi|254781161|r  103 STTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQ  182 (457)
Q Consensus       103 s~~~~~~~~e~~~~~~~~~~~l~~il~~~~~~~~~~g~~P~~~~~~~~~~~~~Ry~~m~~~~~~~g~~~~~mm~~tas~Q  182 (457)
                      +++||.+++++.+++...+..+..++.+.|+.++++|+||+..+.++.+.+++||+.|..+++..     .+|..+||+|
T Consensus        62 ~t~p~~~~~e~~~~l~~~~~~l~~~~~~~g~~l~~~g~~P~~~~~~~~~~~~~ry~~~~~~~~~~-----~~~~~~~g~h  136 (372)
T 1r8g_A           62 ATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYL-----IQQATVFGQH  136 (372)
T ss_dssp             ECCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGG-----GCSCCBCEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCH-----HHHCCCCCCE
T ss_conf             37887999999999999999999877436916424678877872102368557899999864515-----5422564754


Q ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             75147898899999999987656788874378655887787432268885202777886565445775419999999851
Q gi|254781161|r  183 VSLDFSSEHDMATKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALD  262 (457)
Q Consensus       183 v~id~~~~~d~~~~~n~a~~l~P~llAL~aNSPf~~G~~~g~~s~R~~i~~~~d~~r~~~~~~~~~~~~~~e~y~~~~~~  262 (457)
                      |||++.+++++++++|.++.++|+++|||+||||++|+++|+.|+|..+|+.+++.++   +..+.++..|++|++...+
T Consensus       137 vnv~~~~~e~~~~~~~~~~~~~p~llaL~anSP~~~G~~tg~~s~R~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  213 (372)
T 1r8g_A          137 VHVGCASGDDAIYLLHGLSRFVPHFIALSAASPYMQGTDTRFASSRPNIFSAFPDNGP---MPWVSNWQQFEALFRCLSY  213 (372)
T ss_dssp             EEEECSSHHHHHHHHHHHHTTHHHHHHHHCCBCEETTEECSCSBCGGGGGTTSTTCSS---CCCCSSHHHHHHHHHHHTT
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHCCCCCC---CCCCCCHHHHHHHHHHHHH
T ss_conf             7637999999999999999998999999618921048888651123335640878788---8533455779999999875


Q ss_pred             CCCEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEECCCCCCC-HHHHHHHHHHH
Q ss_conf             45316305875326678887885126432101365546677531123456643335501211578888-66755558889
Q gi|254781161|r  263 IPMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPAVRLRNCLEMRGADSGR-LENIFAVAAFW  341 (457)
Q Consensus       263 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~d~~~~~~~~f~~~r~~~~IEiR~~Ds~P-~~~~~a~aAf~  341 (457)
                      .+.++...                               +.|++.++     ...++|||+|++|++| ..+.++.++|+
T Consensus       214 ~~~~~~~~-------------------------------~~~~~~rp-----~~~~~~iE~R~~D~~p~~~~~~a~aa~~  257 (372)
T 1r8g_A          214 TTMIDSIK-------------------------------DLHWDIRP-----SPHFGTVEVRVMDTPLTLSHAVNMAGLI  257 (372)
T ss_dssp             SSSCSSGG-------------------------------GCCCSEEE-----ETTTTEEEEEEEECCSSHHHHHHHHHHH
T ss_pred             CCCCCCCC-------------------------------CCEEECCC-----CCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             47524676-------------------------------42233676-----7777754335689999979999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC------CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf             887653885443232023699999999999997631158668------83089999999999999898523124556458
Q gi|254781161|r  342 TGILYDSSALQNADHLTSSWSFYDINKLNNTVPSKGMRSTVR------GQSLKDIAIQILTFAHQGLKNRSAKNHLQEDE  415 (457)
Q Consensus       342 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~aar~Gl~a~~~------~~~~~~l~~~ll~~A~~GL~~r~~~~~~~~dE  415 (457)
                      .+++..+..  .........++..++.|+|+|+|+|+++.+.      ..++.+++.+|++.+++||++.|        +
T Consensus       258 ~~l~~~l~~--~~~~~~~~~~~~~~~~n~~~aar~Gl~~~~~~~~~g~~~~~~~~~~~ll~~~~~~l~~lg--------~  327 (372)
T 1r8g_A          258 QATAHWLLT--ERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKIG--------A  327 (372)
T ss_dssp             HHHHHHHHH--HCCCCCCGGGGTTHHHHHHHHHHHGGGSEEECTTTCCEEEHHHHHHHHHHHSHHHHHHHT--------C
T ss_pred             HHHHHHHHH--HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCC--------C
T ss_conf             999999986--069985013289999999999983831203547899686899999999999999999887--------9


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHC
Q ss_conf             89999999999838985899999871022188899988767
Q gi|254781161|r  416 TIFLKPLEKIIHNNQTTADEMLAAYHTRWGKSIDPCFEEYA  456 (457)
Q Consensus       416 ~~yL~~l~~~i~~g~t~A~~~l~~y~~~~~~~i~~i~~~~~  456 (457)
                      ..||+++++++++|+|+|+|+++.|+..  +++..++.+++
T Consensus       328 ~~~L~~l~~~v~~~~t~A~~~r~~~~~~--g~l~~~v~~~~  366 (372)
T 1r8g_A          328 SSAIEALHRQVVSGLNEAQLMRDFVADG--GSLIGLVKKHC  366 (372)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHTT--CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHCC--CCHHHHHHHHH
T ss_conf             8999999999984899999999999838--99999999999