RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase [Candidatus Liberibacter asiaticus str. psy62] (457 letters) >gnl|CDD|178221 PLN02611, PLN02611, glutamate--cysteine ligase. Length = 482 Score = 516 bits (1332), Expect = e-147 Identities = 209/443 (47%), Positives = 287/443 (64%), Gaps = 12/443 (2%) Query: 15 DDLVQHIASGIKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLAWKEI 74 +DLV ++ASG KP+E++RIGTEHE F F A RP+ YD I +L+ + ++ W++I Sbjct: 52 EDLVAYLASGCKPKEKWRIGTEHEKFGFELATLRPMKYD---QIAQLLEGLAERFGWEKI 108 Query: 75 MDKGNIIGLANPLSKAGISIEPGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLG 134 M+ NIIGL +S+EPGGQ ELS L+ +HQ E+ ++ +K + + + +G Sbjct: 109 MEGDNIIGLK--QDGQSVSLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIG 166 Query: 135 ILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHDMA 194 LG+GF PKW + ++PIMPK RY +M+ YMP+VG+ GLDMMFRTCT QV+LDFSSE DM Sbjct: 167 FLGIGFQPKWSVADIPIMPKGRYKIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEQDMV 226 Query: 195 TKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFE 254 K RV LQP+ATA+FA+SPF EG+ NG+ S+RS IW TD DRT +LPF+ D+ FE Sbjct: 227 RKFRVGLALQPIATALFANSPFTEGKPNGYLSYRSHIWTDTDKDRTGMLPFVFDDDFGFE 286 Query: 255 HYAQWALDIPMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPA 314 Y +ALD+PMYF+ R +Y CT ++FR FM G L E PTL DWENHL+T+FP Sbjct: 287 RYVDYALDVPMYFVYRNGKYIDCTGMSFRDFMAGKLPQLPGE-LPTLNDWENHLTTIFPE 345 Query: 315 VRLRNCLEMRGADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDINKLNNTVP 374 VRL+ LEMRGAD G + A+ AFW G+LYD +LQ+A + + W+ + L N VP Sbjct: 346 VRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEESLQSALDMIADWTPEEREMLRNKVP 405 Query: 375 SKGMRSTVRGQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKIIHNNQTTAD 434 G+++ R +LKD+A ++L A GL+ R E FL L +I+ T A+ Sbjct: 406 KTGLKTPFRDGTLKDVAEEVLKLAKDGLERRGYN------EEGFLNALAEIVRTGVTPAE 459 Query: 435 EMLAAYHTRWGKSIDPCFEEYAY 457 +L Y +WG+S+DP FEE Y Sbjct: 460 RLLELYEGKWGRSVDPVFEELLY 482 >gnl|CDD|130503 TIGR01436, glu_cys_lig_pln, glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species. Length = 446 Score = 508 bits (1309), Expect = e-144 Identities = 218/448 (48%), Positives = 294/448 (65%), Gaps = 4/448 (0%) Query: 11 VTSIDDLVQHIASGIKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLA 70 +TS DDL+ ++A+G KP+E++RIGTEHE F F + RP+ Y+ + I +L I ++ Sbjct: 2 LTSRDDLIAYLAAGCKPKEQWRIGTEHEKFGFEKNTLRPMKYEQKGGIAELLNGIAERFG 61 Query: 71 WKEIMDKGNIIGLANPLSKAGISIEPGGQLELSTTTLQNVHQIKGEILGYIQILKEITQN 130 W+++M+ IIGL K IS+EPGGQ ELS L+ +H+ EI ++ +KE+ + Sbjct: 62 WQKVMEGDKIIGLKQ--DKQSISLEPGGQFELSGAPLETIHETCDEINSHLYQVKEVAEE 119 Query: 131 LDLGILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSE 190 + +G LG+GF PKW+ +++P+MPK RY +M+ YMP+VG GLDMM RTCT QV+LDFSSE Sbjct: 120 MGIGFLGLGFQPKWRREDIPLMPKGRYDIMRNYMPKVGKLGLDMMLRTCTVQVNLDFSSE 179 Query: 191 HDMATKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDN 250 DM K R S LQPLATA+FA+SPF EG+ NGF S+RS IW TD DRT +LPF+ D+ Sbjct: 180 ADMVRKFRASLALQPLATALFANSPFLEGKPNGFLSYRSHIWTDTDPDRTGMLPFVFDDS 239 Query: 251 SNFEHYAQWALDIPMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLST 310 FE Y +ALD+PMYF RK +Y CT +TFR F+ G L E PTL DWENHLST Sbjct: 240 FGFERYVDYALDVPMYFAYRKGKYIDCTGMTFRAFLAGKLPALPGEL-PTLNDWENHLST 298 Query: 311 LFPAVRLRNCLEMRGADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDINKLN 370 +FP VRL+ LEMRGAD G + A+ AFW G+LYD LQ A LT WS + L Sbjct: 299 IFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDLLQAALDLTKDWSPAEREMLR 358 Query: 371 NTVPSKGMRSTVR-GQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKIIHNN 429 N VP G+++ R GQSLK + +L A GL+ R KN +DE+ FL P+ +++ Sbjct: 359 NEVPVTGLKTLFRDGQSLKHLGEDVLKLAKDGLERRGYKNAGGQDESRFLNPVGEVVETG 418 Query: 430 QTTADEMLAAYHTRWGKSIDPCFEEYAY 457 QT A+ +L Y+ WG+S+DP F+E Y Sbjct: 419 QTPAERLLEMYNGEWGQSVDPVFQELLY 446 >gnl|CDD|163269 TIGR03444, gshA_related, glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown. Length = 390 Score = 123 bits (309), Expect = 1e-28 Identities = 95/333 (28%), Positives = 151/333 (45%), Gaps = 30/333 (9%) Query: 32 RIGTEHESFIF-SRADHRPLPYDGEKSIVTILQAIQKKLAWKEIMDKGNIIGLANPLSKA 90 +G E E + A H P L A ++ + I + I G P Sbjct: 14 LVGLELEWLTVQTPAAHCP-----------DLAAPTRRPSPHRI--RAVIPGSPAPPLPG 60 Query: 91 G--ISIEPGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDE 148 G I++EPGGQLELS + + + +L+ L ++G+G +P + Sbjct: 61 GSRITVEPGGQLELSGPPADGLTAAVAALAADLAVLRAALAEDGLALVGLGADP-LR-PP 118 Query: 149 MPIMPKSRYVLMKKYMPQ-VGTHGLDMMFRTCTTQVSLDFSSE-HDMATKLRVSFKLQPL 206 ++P RY M+++ +G G MM T + QV+LD ++ + A + R++ L P+ Sbjct: 119 RRVLPGPRYRAMEQFFATGIGPFGALMMCSTASVQVNLDAGTDPAEWAERWRLAHALGPV 178 Query: 207 ATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDIPMY 266 A FA+SP GR G++S R +W D+ RT + D+ + +A++ALD P+ Sbjct: 179 LIAAFANSPALGGRPTGWRSTRQRVWGQLDAARTGPVLAASGDDPADD-WARYALDAPLM 237 Query: 267 FI--LRKKEYYCCTD-ITFRQFMNG--ALKGRIKEWHPTLEDWENHLSTLFPAVRLRNCL 321 + E TD +TF ++ G + GR PT D + HL+TLFP VR R L Sbjct: 238 CVRNPDDGEPVPVTDGVTFADWVAGRDPVIGR----RPTRADLDYHLTTLFPPVRPRGWL 293 Query: 322 EMRGADSGRLENIFAVAAFWTGILYDSSALQNA 354 E+R D+ + A T +L D A A Sbjct: 294 ELRYLDAQPGDGWPVPVATLTALLDDPVAAAEA 326 >gnl|CDD|184107 PRK13517, PRK13517, carboxylate-amine ligase; Provisional. Length = 373 Score = 46.0 bits (110), Expect = 2e-05 Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 14/161 (8%) Query: 99 QLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYV 158 +E+ T V + + ++ + + + + G +P E P+ K RY Sbjct: 57 TVEVVTGVCDTVAEARADLRRTRALARRAAERRGARLAAAGTHPFSDWSEQPVTDKPRYA 116 Query: 159 LMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEH---DMATKLRVSFKLQPLATAIFASSP 215 + + L C V + S + +LR P A+ A+SP Sbjct: 117 ELIERTQWWARQQL-----ICGVHVHVGVPSREKVVPVINRLRPWL---PHLLALSANSP 168 Query: 216 FAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHY 256 F G G+ S R+ +++ T P + +E Y Sbjct: 169 FWRGEDTGYASNRAMLFQQLP---TAGPPPQFGSWAEYEAY 206 >gnl|CDD|184105 PRK13515, PRK13515, carboxylate-amine ligase; Provisional. Length = 371 Score = 45.3 bits (108), Expect = 3e-05 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 11/137 (8%) Query: 99 QLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNP--KWKLDEMPIMPKSR 156 Q+E+ T + + + E+ Q + ++ L I+ G +P W+ E I PK R Sbjct: 51 QVEVGTPVCATIAEAREELGRLRQRVAQLAAQFGLRIIAAGTHPFADWRRQE--ITPKER 108 Query: 157 YVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHD-MATKLRVSFKLQPLATAIFASSP 215 Y + + + V L C V + D + +V + L P A+ SSP Sbjct: 109 YAQLVEDLQDVARRNL-----ICGLHVHVGIPDREDRIDLMNQVRYFL-PHLLALSTSSP 162 Query: 216 FAEGRINGFQSWRSEIW 232 F GR G +S+RS ++ Sbjct: 163 FWGGRDTGLKSYRSAVF 179 >gnl|CDD|162674 TIGR02050, gshA_cyan_rel, uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown. Length = 287 Score = 45.0 bits (107), Expect = 3e-05 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 7/135 (5%) Query: 99 QLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYV 158 Q+EL+T + + +I L + + L I G G +P + + RY Sbjct: 46 QVELATPVCTTLAEAAAQIRAVRARLVQAASDHGLRICGAGTHPFARWRRQEVADNPRYQ 105 Query: 159 LMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHD-MATKLRVSFKLQPLATAIFASSPFA 217 + + V L V + S D +A R+ L P A+ ASSPF Sbjct: 106 RLLERYGYVARQQL-----VFGLHVHVGVPSPDDAVAVLNRLLPWL-PHLLALSASSPFW 159 Query: 218 EGRINGFQSWRSEIW 232 +G G+ S+R I+ Sbjct: 160 QGFDTGYASYRRNIF 174 >gnl|CDD|131103 TIGR02048, gshA_cyano, glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione. Length = 376 Score = 30.7 bits (69), Expect = 0.77 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 8/55 (14%) Query: 205 PLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQW 259 PL A+ ASSPF +G++ G+ S R +++ T E+ F ++ H+ +W Sbjct: 141 PLFLALSASSPFLDGQVTGYHSTRWQMFPKTP---QEVPLF-----TSHAHFIEW 187 >gnl|CDD|184106 PRK13516, PRK13516, gamma-glutamyl:cysteine ligase; Provisional. Length = 373 Score = 29.1 bits (66), Expect = 2.4 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Query: 100 LELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNP--KWKLDEMPIMPKSRY 157 +E++T +++ Q G++ +L + L++GI G G +P +W+ I R+ Sbjct: 59 IEIATGVCRDIDQALGQLSAMRDVLVQAADKLNIGICGGGTHPFQQWQ--RQRICDNPRF 116 Query: 158 V-LMKKY 163 L + Y Sbjct: 117 QYLSELY 123 >gnl|CDD|150098 pfam09319, DUF1976, Domain of unknown function (DUF1976). Members of this family are found in a set of hypothetical Mycoplasmal proteins. Their exact function has not, as yet, been defined. Length = 1114 Score = 28.6 bits (64), Expect = 3.9 Identities = 9/42 (21%), Positives = 19/42 (45%) Query: 211 FASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSN 252 F+S+ + G++ S W + D +R ++L S+ Sbjct: 97 FSSNVPDKQGTKGYEGAWSRAWYNWDYNRNTDKIWVLGYWSS 138 >gnl|CDD|149734 pfam08767, CRM1_C, CRM1 C terminal. CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat. Length = 235 Score = 28.0 bits (63), Expect = 5.7 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 7/46 (15%) Query: 93 SIEPGGQLELSTTTLQNVHQIKGEILGYIQI-------LKEITQNL 131 +I GG T ++ + +K EIL I+ L+++ NL Sbjct: 23 AIAEGGPNATKTPLVKLLRTVKKEILKLIETYIDKAEDLEQVGNNL 68 >gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional. Length = 417 Score = 27.7 bits (62), Expect = 7.2 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Query: 121 IQILKEITQNLDLGIL--GMGFNPKWKLDEMPI 151 IQ++K + +D I+ GM F K LD MPI Sbjct: 221 IQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPI 253 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.135 0.413 Gapped Lambda K H 0.267 0.0632 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,507,351 Number of extensions: 476376 Number of successful extensions: 821 Number of sequences better than 10.0: 1 Number of HSP's gapped: 809 Number of HSP's successfully gapped: 16 Length of query: 457 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 360 Effective length of database: 3,898,497 Effective search space: 1403458920 Effective search space used: 1403458920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.7 bits)