RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase
[Candidatus Liberibacter asiaticus str. psy62]
         (457 letters)



>gnl|CDD|178221 PLN02611, PLN02611, glutamate--cysteine ligase.
          Length = 482

 Score =  516 bits (1332), Expect = e-147
 Identities = 209/443 (47%), Positives = 287/443 (64%), Gaps = 12/443 (2%)

Query: 15  DDLVQHIASGIKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLAWKEI 74
           +DLV ++ASG KP+E++RIGTEHE F F  A  RP+ YD    I  +L+ + ++  W++I
Sbjct: 52  EDLVAYLASGCKPKEKWRIGTEHEKFGFELATLRPMKYD---QIAQLLEGLAERFGWEKI 108

Query: 75  MDKGNIIGLANPLSKAGISIEPGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLG 134
           M+  NIIGL        +S+EPGGQ ELS   L+ +HQ   E+  ++  +K + + + +G
Sbjct: 109 MEGDNIIGLK--QDGQSVSLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIG 166

Query: 135 ILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHDMA 194
            LG+GF PKW + ++PIMPK RY +M+ YMP+VG+ GLDMMFRTCT QV+LDFSSE DM 
Sbjct: 167 FLGIGFQPKWSVADIPIMPKGRYKIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEQDMV 226

Query: 195 TKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFE 254
            K RV   LQP+ATA+FA+SPF EG+ NG+ S+RS IW  TD DRT +LPF+  D+  FE
Sbjct: 227 RKFRVGLALQPIATALFANSPFTEGKPNGYLSYRSHIWTDTDKDRTGMLPFVFDDDFGFE 286

Query: 255 HYAQWALDIPMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPA 314
            Y  +ALD+PMYF+ R  +Y  CT ++FR FM G L     E  PTL DWENHL+T+FP 
Sbjct: 287 RYVDYALDVPMYFVYRNGKYIDCTGMSFRDFMAGKLPQLPGE-LPTLNDWENHLTTIFPE 345

Query: 315 VRLRNCLEMRGADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDINKLNNTVP 374
           VRL+  LEMRGAD G    + A+ AFW G+LYD  +LQ+A  + + W+  +   L N VP
Sbjct: 346 VRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEESLQSALDMIADWTPEEREMLRNKVP 405

Query: 375 SKGMRSTVRGQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKIIHNNQTTAD 434
             G+++  R  +LKD+A ++L  A  GL+ R         E  FL  L +I+    T A+
Sbjct: 406 KTGLKTPFRDGTLKDVAEEVLKLAKDGLERRGYN------EEGFLNALAEIVRTGVTPAE 459

Query: 435 EMLAAYHTRWGKSIDPCFEEYAY 457
            +L  Y  +WG+S+DP FEE  Y
Sbjct: 460 RLLELYEGKWGRSVDPVFEELLY 482


>gnl|CDD|130503 TIGR01436, glu_cys_lig_pln, glutamate--cysteine ligase, plant type.
            This model represents one of two highly dissimilar
           forms of glutamate--cysteine ligase
           (gamma-glutamylcysteine synthetase), an enzyme of
           glutathione biosynthesis. The other type is modeled by
           TIGR01434. This type is found in plants (with a probable
           transit peptide), root nodule and other bacteria, but
           not E. coli and closely related species.
          Length = 446

 Score =  508 bits (1309), Expect = e-144
 Identities = 218/448 (48%), Positives = 294/448 (65%), Gaps = 4/448 (0%)

Query: 11  VTSIDDLVQHIASGIKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLA 70
           +TS DDL+ ++A+G KP+E++RIGTEHE F F +   RP+ Y+ +  I  +L  I ++  
Sbjct: 2   LTSRDDLIAYLAAGCKPKEQWRIGTEHEKFGFEKNTLRPMKYEQKGGIAELLNGIAERFG 61

Query: 71  WKEIMDKGNIIGLANPLSKAGISIEPGGQLELSTTTLQNVHQIKGEILGYIQILKEITQN 130
           W+++M+   IIGL     K  IS+EPGGQ ELS   L+ +H+   EI  ++  +KE+ + 
Sbjct: 62  WQKVMEGDKIIGLKQ--DKQSISLEPGGQFELSGAPLETIHETCDEINSHLYQVKEVAEE 119

Query: 131 LDLGILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSE 190
           + +G LG+GF PKW+ +++P+MPK RY +M+ YMP+VG  GLDMM RTCT QV+LDFSSE
Sbjct: 120 MGIGFLGLGFQPKWRREDIPLMPKGRYDIMRNYMPKVGKLGLDMMLRTCTVQVNLDFSSE 179

Query: 191 HDMATKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDN 250
            DM  K R S  LQPLATA+FA+SPF EG+ NGF S+RS IW  TD DRT +LPF+  D+
Sbjct: 180 ADMVRKFRASLALQPLATALFANSPFLEGKPNGFLSYRSHIWTDTDPDRTGMLPFVFDDS 239

Query: 251 SNFEHYAQWALDIPMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLST 310
             FE Y  +ALD+PMYF  RK +Y  CT +TFR F+ G L     E  PTL DWENHLST
Sbjct: 240 FGFERYVDYALDVPMYFAYRKGKYIDCTGMTFRAFLAGKLPALPGEL-PTLNDWENHLST 298

Query: 311 LFPAVRLRNCLEMRGADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDINKLN 370
           +FP VRL+  LEMRGAD G    + A+ AFW G+LYD   LQ A  LT  WS  +   L 
Sbjct: 299 IFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDLLQAALDLTKDWSPAEREMLR 358

Query: 371 NTVPSKGMRSTVR-GQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKIIHNN 429
           N VP  G+++  R GQSLK +   +L  A  GL+ R  KN   +DE+ FL P+ +++   
Sbjct: 359 NEVPVTGLKTLFRDGQSLKHLGEDVLKLAKDGLERRGYKNAGGQDESRFLNPVGEVVETG 418

Query: 430 QTTADEMLAAYHTRWGKSIDPCFEEYAY 457
           QT A+ +L  Y+  WG+S+DP F+E  Y
Sbjct: 419 QTPAERLLEMYNGEWGQSVDPVFQELLY 446


>gnl|CDD|163269 TIGR03444, gshA_related, glutamate--cysteine ligase family protein.
            Members of this bacterial protein family bear homology
           to glutamate--cysteine ligase, an enzyme in the two-step
           pathway of glutathione (GSH) biosynthesis, but are
           distinctly different. Among the bacterial genomes that
           carry the uncharacterized methyltransferase (TIGR03438)
           and conserved hypothetical protein TIGR03440, this
           protein is found in a subset, always in the vicinity of
           these other genes. Conserved hypothetical protein
           TIGR03442 is found in these same genomes. The role of
           this cassette is probably biosynthetic, but the product
           is unknown.
          Length = 390

 Score =  123 bits (309), Expect = 1e-28
 Identities = 95/333 (28%), Positives = 151/333 (45%), Gaps = 30/333 (9%)

Query: 32  RIGTEHESFIF-SRADHRPLPYDGEKSIVTILQAIQKKLAWKEIMDKGNIIGLANPLSKA 90
            +G E E     + A H P            L A  ++ +   I  +  I G   P    
Sbjct: 14  LVGLELEWLTVQTPAAHCP-----------DLAAPTRRPSPHRI--RAVIPGSPAPPLPG 60

Query: 91  G--ISIEPGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDE 148
           G  I++EPGGQLELS      +      +   + +L+       L ++G+G +P  +   
Sbjct: 61  GSRITVEPGGQLELSGPPADGLTAAVAALAADLAVLRAALAEDGLALVGLGADP-LR-PP 118

Query: 149 MPIMPKSRYVLMKKYMPQ-VGTHGLDMMFRTCTTQVSLDFSSE-HDMATKLRVSFKLQPL 206
             ++P  RY  M+++    +G  G  MM  T + QV+LD  ++  + A + R++  L P+
Sbjct: 119 RRVLPGPRYRAMEQFFATGIGPFGALMMCSTASVQVNLDAGTDPAEWAERWRLAHALGPV 178

Query: 207 ATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDIPMY 266
             A FA+SP   GR  G++S R  +W   D+ RT  +     D+   + +A++ALD P+ 
Sbjct: 179 LIAAFANSPALGGRPTGWRSTRQRVWGQLDAARTGPVLAASGDDPADD-WARYALDAPLM 237

Query: 267 FI--LRKKEYYCCTD-ITFRQFMNG--ALKGRIKEWHPTLEDWENHLSTLFPAVRLRNCL 321
            +      E    TD +TF  ++ G   + GR     PT  D + HL+TLFP VR R  L
Sbjct: 238 CVRNPDDGEPVPVTDGVTFADWVAGRDPVIGR----RPTRADLDYHLTTLFPPVRPRGWL 293

Query: 322 EMRGADSGRLENIFAVAAFWTGILYDSSALQNA 354
           E+R  D+   +      A  T +L D  A   A
Sbjct: 294 ELRYLDAQPGDGWPVPVATLTALLDDPVAAAEA 326


>gnl|CDD|184107 PRK13517, PRK13517, carboxylate-amine ligase; Provisional.
          Length = 373

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 14/161 (8%)

Query: 99  QLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYV 158
            +E+ T     V + + ++     + +   +     +   G +P     E P+  K RY 
Sbjct: 57  TVEVVTGVCDTVAEARADLRRTRALARRAAERRGARLAAAGTHPFSDWSEQPVTDKPRYA 116

Query: 159 LMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEH---DMATKLRVSFKLQPLATAIFASSP 215
            + +         L      C   V +   S      +  +LR      P   A+ A+SP
Sbjct: 117 ELIERTQWWARQQL-----ICGVHVHVGVPSREKVVPVINRLRPWL---PHLLALSANSP 168

Query: 216 FAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHY 256
           F  G   G+ S R+ +++      T   P      + +E Y
Sbjct: 169 FWRGEDTGYASNRAMLFQQLP---TAGPPPQFGSWAEYEAY 206


>gnl|CDD|184105 PRK13515, PRK13515, carboxylate-amine ligase; Provisional.
          Length = 371

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 11/137 (8%)

Query: 99  QLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNP--KWKLDEMPIMPKSR 156
           Q+E+ T     + + + E+    Q + ++     L I+  G +P   W+  E  I PK R
Sbjct: 51  QVEVGTPVCATIAEAREELGRLRQRVAQLAAQFGLRIIAAGTHPFADWRRQE--ITPKER 108

Query: 157 YVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHD-MATKLRVSFKLQPLATAIFASSP 215
           Y  + + +  V    L      C   V +      D +    +V + L P   A+  SSP
Sbjct: 109 YAQLVEDLQDVARRNL-----ICGLHVHVGIPDREDRIDLMNQVRYFL-PHLLALSTSSP 162

Query: 216 FAEGRINGFQSWRSEIW 232
           F  GR  G +S+RS ++
Sbjct: 163 FWGGRDTGLKSYRSAVF 179


>gnl|CDD|162674 TIGR02050, gshA_cyan_rel, uncharacterized enzyme.  This family
           represents a division of a larger family, the other
           branch of which is predicted to act as
           glutamate--cysteine ligase (the first of two enzymes in
           glutathione biosynthesis) in the cyanobacteria. Species
           containing this protein, however, are generally not
           believe to make glutathione, and the function is
           unknown.
          Length = 287

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 99  QLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYV 158
           Q+EL+T     + +   +I      L +   +  L I G G +P  +     +    RY 
Sbjct: 46  QVELATPVCTTLAEAAAQIRAVRARLVQAASDHGLRICGAGTHPFARWRRQEVADNPRYQ 105

Query: 159 LMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHD-MATKLRVSFKLQPLATAIFASSPFA 217
            + +    V    L          V +   S  D +A   R+   L P   A+ ASSPF 
Sbjct: 106 RLLERYGYVARQQL-----VFGLHVHVGVPSPDDAVAVLNRLLPWL-PHLLALSASSPFW 159

Query: 218 EGRINGFQSWRSEIW 232
           +G   G+ S+R  I+
Sbjct: 160 QGFDTGYASYRRNIF 174


>gnl|CDD|131103 TIGR02048, gshA_cyano, glutamate--cysteine ligase, cyanobacterial,
           putative.  This family consists of proteins believed
           (see Copley SD, Dhillon JK, 2002) to be the
           glutamate--cysteine ligases of several cyanobacteria,
           which are known to make glutathione.
          Length = 376

 Score = 30.7 bits (69), Expect = 0.77
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 8/55 (14%)

Query: 205 PLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQW 259
           PL  A+ ASSPF +G++ G+ S R +++  T     E+  F     ++  H+ +W
Sbjct: 141 PLFLALSASSPFLDGQVTGYHSTRWQMFPKTP---QEVPLF-----TSHAHFIEW 187


>gnl|CDD|184106 PRK13516, PRK13516, gamma-glutamyl:cysteine ligase; Provisional.
          Length = 373

 Score = 29.1 bits (66), Expect = 2.4
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 100 LELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNP--KWKLDEMPIMPKSRY 157
           +E++T   +++ Q  G++     +L +    L++GI G G +P  +W+     I    R+
Sbjct: 59  IEIATGVCRDIDQALGQLSAMRDVLVQAADKLNIGICGGGTHPFQQWQ--RQRICDNPRF 116

Query: 158 V-LMKKY 163
             L + Y
Sbjct: 117 QYLSELY 123


>gnl|CDD|150098 pfam09319, DUF1976, Domain of unknown function (DUF1976).  Members
           of this family are found in a set of hypothetical
           Mycoplasmal proteins. Their exact function has not, as
           yet, been defined.
          Length = 1114

 Score = 28.6 bits (64), Expect = 3.9
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 211 FASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSN 252
           F+S+   +    G++   S  W + D +R     ++L   S+
Sbjct: 97  FSSNVPDKQGTKGYEGAWSRAWYNWDYNRNTDKIWVLGYWSS 138


>gnl|CDD|149734 pfam08767, CRM1_C, CRM1 C terminal.  CRM1 (also known as Exportin1)
           mediates the nuclear export of proteins bearing a
           leucine-rich nuclear export signal (NES). CRM1 forms a
           complex with the NES containing protein and the small
           GTPase Ran. This region forms an alpha helical structure
           formed by six helical hairpin motifs that are
           structurally similar to the HEAT repeat, but share
           little sequence similarity to the HEAT repeat.
          Length = 235

 Score = 28.0 bits (63), Expect = 5.7
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 93  SIEPGGQLELSTTTLQNVHQIKGEILGYIQI-------LKEITQNL 131
           +I  GG     T  ++ +  +K EIL  I+        L+++  NL
Sbjct: 23  AIAEGGPNATKTPLVKLLRTVKKEILKLIETYIDKAEDLEQVGNNL 68


>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional.
          Length = 417

 Score = 27.7 bits (62), Expect = 7.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 121 IQILKEITQNLDLGIL--GMGFNPKWKLDEMPI 151
           IQ++K +   +D  I+  GM F  K  LD MPI
Sbjct: 221 IQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPI 253


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0632    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,507,351
Number of extensions: 476376
Number of successful extensions: 821
Number of sequences better than 10.0: 1
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 16
Length of query: 457
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 360
Effective length of database: 3,898,497
Effective search space: 1403458920
Effective search space used: 1403458920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)