RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase
[Candidatus Liberibacter asiaticus str. psy62]
         (457 letters)



>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione
           biosynthesis, beta-hairpin, redox regulation; HET: GLU;
           2.09A {Brassica juncea} PDB: 2gwc_A* (A:1-422)
          Length = 422

 Score =  274 bits (702), Expect = 1e-74
 Identities = 189/422 (44%), Positives = 259/422 (61%), Gaps = 12/422 (2%)

Query: 7   ANTIVTSIDDLVQHIASGIKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQ 66
             T   + +DL+ ++ASG K +E++RIGTEHE F F     RP+ YD    I  +L +I 
Sbjct: 11  VATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQ---IAELLNSIA 67

Query: 67  KKLAWKEIMDKGNIIGLANPLSKAGISIEPGGQLELSTTTLQNVHQIKGEILGYIQILKE 126
           ++  W+++M+   IIGL        IS+EPGGQ ELS   L+ +HQ   E+  ++  +K 
Sbjct: 68  ERFEWEKVMEGDKIIGLKQGKQ--SISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKA 125

Query: 127 ITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLD 186
           + + + +G LGMGF PKW+ +++P MPK RY +M+ YMP+VG+ GLDMM RTCT QV+LD
Sbjct: 126 VAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTVQVNLD 185

Query: 187 FSSEHDMATKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFI 246
           FSSE DM  K R    LQP+ATA+FA+SPF EG+ NGF S RS IW  TD DRT +LPF+
Sbjct: 186 FSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTGMLPFV 245

Query: 247 LRDNSNFEHYAQWALDIPMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWEN 306
             D+  FE Y  +ALD+PMYF  R  +Y  CT +TFRQF+ G L     E  PT  DWEN
Sbjct: 246 FDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGE-LPTYNDWEN 304

Query: 307 HLSTLFPAVRLRNCLEMRGADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDI 366
           HL+T+FP VRL+  +EMRGAD G    + A+ AFW G+LYD   LQ+   LT+ W+  + 
Sbjct: 305 HLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLDLTADWTPAER 364

Query: 367 NKLNNTVPSKGMRSTVRGQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKII 426
             L N VP  G+++  R   LK +A  +L  A  GL+           E  FL  + +++
Sbjct: 365 EMLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLE------RRGYKEVGFLNAVTEVV 418

Query: 427 HN 428
             
Sbjct: 419 RT 420


>1r8g_A Hypothetical protein YBDK; structural genomics, unknown
           function, carboxylate-amine ligase, structure 2 function
           project, S2F; 2.15A {Escherichia coli} (A:)
          Length = 372

 Score =  227 bits (580), Expect = 2e-60
 Identities = 51/435 (11%), Positives = 114/435 (26%), Gaps = 73/435 (16%)

Query: 25  IKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLAWKEIMDKGNIIGLA 84
               E F +G E E  + +   +             ++ A                  + 
Sbjct: 6   FHVSEPFTLGIELEXQVVNPPGYDLSQD-----SSXLIDA------------------VK 42

Query: 85  NPLSKAGISIEPGGQ-LELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPK 143
           N ++   +  +     LEL+T   ++++Q  G+     +++ +   +  L I G G +P 
Sbjct: 43  NKITAGEVKHDITESXLELATDVCRDINQAAGQFSAXQKVVLQAATDHHLEICGGGTHPF 102

Query: 144 WKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHDMATKLRVSFKL 203
            K     +    RY    +    +               V +  +S  D    L    + 
Sbjct: 103 QKWQRQEVCDNERYQRTLENFGYLI-----QQATVFGQHVHVGCASGDDAIYLLHGLSRF 157

Query: 204 QPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDI 263
            P   A+ A+SP+ +G    F S R  I+     +        + +   FE   +     
Sbjct: 158 VPHFIALSAASPYXQGTDTRFASSRPNIFSAFPDNG---PXPWVSNWQQFEALFRCLSYT 214

Query: 264 PMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPAVRLRNCLEM 323
                ++   ++          +    + R+ +   TL                   L  
Sbjct: 215 TXIDSIK-DLHWDIRPSPHFGTV----EVRVXDTPLTLSHA--VNXAGLIQATAHWLLTE 267

Query: 324 RGADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDINKLNNTVPSKGMRSTVR 383
           R       + +      +    Y    +    H                        T  
Sbjct: 268 RPFKHQEKDYLLYKFNRFQACRYGLEGVITDPH------------------------TGD 303

Query: 384 GQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKIIHNNQTTADEMLAAY--H 441
            + L +  +++L                    +  ++ L + + +    A          
Sbjct: 304 RRPLTEDTLRLLEKIAPSAHKI--------GASSAIEALHRQVVSGLNEAQLXRDFVADG 355

Query: 442 TRWGKSIDPCFEEYA 456
                 +    E +A
Sbjct: 356 GSLIGLVKKHCEIWA 370


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 27.4 bits (60), Expect = 4.0
 Identities = 11/130 (8%), Positives = 34/130 (26%), Gaps = 31/130 (23%)

Query: 58  IVTILQAIQKKLAWKEIMDKGNIIGLANPLS--------KAGISIEPGGQLELSTTTLQN 109
             +   A Q      E+     +                 A I I   G +      +  
Sbjct: 196 APSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTV------MDL 249

Query: 110 VHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLM--------- 160
           + + + +       + +     D  +   G   +    +   +P++  +++         
Sbjct: 250 MKRRQLDARDIKVFVLDE---ADNMLDQQGLGDQSMRIKHL-LPRNTQIVLFSATFSERV 305

Query: 161 ----KKYMPQ 166
               +++ P 
Sbjct: 306 EKYAERFAPN 315


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,523,707
Number of extensions: 159290
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 8
Length of query: 457
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 366
Effective length of database: 1,879,794
Effective search space: 688004604
Effective search space used: 688004604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)