RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase
[Candidatus Liberibacter asiaticus str. psy62]
(457 letters)
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione
biosynthesis, beta-hairpin, redox regulation; HET: GLU;
2.09A {Brassica juncea} PDB: 2gwc_A*
Length = 449
Score = 397 bits (1022), Expect = e-111
Identities = 202/443 (45%), Positives = 277/443 (62%), Gaps = 12/443 (2%)
Query: 15 DDLVQHIASGIKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLAWKEI 74
+DL+ ++ASG K +E++RIGTEHE F F RP+ YD I +L +I ++ W+++
Sbjct: 19 EDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQ---IAELLNSIAERFEWEKV 75
Query: 75 MDKGNIIGLANPLSKAGISIEPGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLG 134
M+ IIGL K IS+EPGGQ ELS L+ +HQ E+ ++ +K + + + +G
Sbjct: 76 MEGDKIIGLKQG--KQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIG 133
Query: 135 ILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHDMA 194
LGMGF PKW+ +++P MPK RY +M+ YMP+VG+ GLDMM RTCT QV+LDFSSE DM
Sbjct: 134 FLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTVQVNLDFSSEADMI 193
Query: 195 TKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFE 254
K R LQP+ATA+FA+SPF EG+ NGF S RS IW TD DRT +LPF+ D+ FE
Sbjct: 194 RKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTGMLPFVFDDSFGFE 253
Query: 255 HYAQWALDIPMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPA 314
Y +ALD+PMYF R +Y CT +TFRQF+ G L E PT DWENHL+T+FP
Sbjct: 254 QYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGEL-PTYNDWENHLTTIFPE 312
Query: 315 VRLRNCLEMRGADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDINKLNNTVP 374
VRL+ +EMRGAD G + A+ AFW G+LYD LQ+ LT+ W+ + L N VP
Sbjct: 313 VRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLDLTADWTPAEREMLRNKVP 372
Query: 375 SKGMRSTVRGQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKIIHNNQTTAD 434
G+++ R LK +A +L A GL+ R E FL + +++ T A+
Sbjct: 373 VTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGY------KEVGFLNAVTEVVRTGVTPAE 426
Query: 435 EMLAAYHTRWGKSIDPCFEEYAY 457
+L Y+ WG+S+DP F+E Y
Sbjct: 427 NLLEMYNGEWGQSVDPVFQELLY 449
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function,
carboxylate-amine ligase, structure 2 function project,
S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB:
1tt4_A
Length = 372
Score = 182 bits (462), Expect = 2e-46
Identities = 53/432 (12%), Positives = 117/432 (27%), Gaps = 73/432 (16%)
Query: 26 KPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLAWKEIMDKGNIIGLAN 85
E F +G E E + + + ++ A + N
Sbjct: 7 HVSEPFTLGIELEMQVVNPPGYDLSQDSSM-----LIDA------------------VKN 43
Query: 86 PLSKAGISIE-PGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKW 144
++ + + LEL+T ++++Q G+ +++ + + L I G G +P
Sbjct: 44 KITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQ 103
Query: 145 KLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHDMATKLRVSFKLQ 204
K + RY + + V + +S D L +
Sbjct: 104 KWQRQEVCDNERYQRTLENFGYLI-----QQATVFGQHVHVGCASGDDAIYLLHGLSRFV 158
Query: 205 PLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDIP 264
P A+ A+SP+ +G F S R I+ + + FE +
Sbjct: 159 PHFIALSAASPYMQGTDTRFASSRPNIFSAF---PDNGPMPWVSNWQQFEALFRCLSYTT 215
Query: 265 MYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPAVRLRNCLEMR 324
M ++ ++ + + R+ + TL L R
Sbjct: 216 MIDSIKDL-HWDIRPSPHFGTV----EVRVMDTPLTLSHA--VNMAGLIQATAHWLLTER 268
Query: 325 GADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDINKLNNTVPSKGMRSTVRG 384
+ + + Y + H T
Sbjct: 269 PFKHQEKDYLLYKFNRFQACRYGLEGVITDPH------------------------TGDR 304
Query: 385 QSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKIIHNNQTTADEMLAAYHTRW 444
+ L + +++L + ++ L + + + A M
Sbjct: 305 RPLTEDTLRLLEKIAPSAHKI--------GASSAIEALHRQVVSGLNEAQLMRDFVAD-- 354
Query: 445 GKSIDPCFEEYA 456
G S+ +++
Sbjct: 355 GGSLIGLVKKHC 366
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 44.2 bits (104), Expect = 7e-05
Identities = 63/448 (14%), Positives = 120/448 (26%), Gaps = 201/448 (44%)
Query: 86 PLSKAGISIEPGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWK 145
PL+ + S+E L + T + Q++ + + +IL E T+
Sbjct: 8 PLTLSHGSLEHV--LLVPTASFFIASQLQEQ---FNKILPEPTEGFAA------------ 50
Query: 146 LDEMPIMPK---SRYV--LMKKYMPQVGTHGLDMMFRTCTTQVSLD-FSSE-------HD 192
D+ P P +++ + P ++ + L F + H
Sbjct: 51 -DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL------NLCLTEFENCYLEGNDIHA 103
Query: 193 MATKLRVSFKLQPLA---------TAIFAS-SPFAEGRINGFQSWRSEIWRHTDSDRTEI 242
+A KL + TA + PF + S ++R ++
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS-------NSALFRAVGEGNAQL 156
Query: 243 L------------------------PFI--------------LRDNSNFE-HYAQWALDI 263
+ + +R + E + Q L+I
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLNI 215
Query: 264 PMYFILRKKE------Y------------------YCCT----DIT---FRQFMNGALKG 292
+ L Y Y T T R ++ GA G
Sbjct: 216 LEW--LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TG 272
Query: 293 RIKEWHP----------TLEDWENHLSTLFPAVRLRNCLEMRGADSGRLENIFAVAAFWT 342
H + WE + F +VR + + L F+
Sbjct: 273 -----HSQGLVTAVAIAETDSWE----SFFVSVR--KAITV-------L--------FFI 306
Query: 343 GI----------LYDSSALQNA-DHLTSSWSFYDINKLNNTVPSKGMRSTVRGQSLKDIA 391
G+ L S L+++ ++ N VPS M S + + +
Sbjct: 307 GVRCYEAYPNTSL-PPSILEDSLEN-------------NEGVPSP-MLS-ISNLTQE--Q 348
Query: 392 IQILTFAHQGLKNRSAKNHLQEDETIFL 419
+Q + N HL + + +
Sbjct: 349 VQ----DYVNKTNS----HLPAGKQVEI 368
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.9 bits (71), Expect = 0.28
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 190 EHDMATKLRVSFKL-----QPLATAIFAS 213
E KL+ S KL P A AI A+
Sbjct: 18 EKQALKKLQASLKLYADDSAP-ALAIKAT 45
Score = 31.5 bits (70), Expect = 0.38
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Query: 347 DSSALQNADHLTSSWSFY-DINKLNNTVPSKGMRSTV 382
+ AL+ L +S Y D ++ P+ +++T+
Sbjct: 18 EKQALKK---LQASLKLYAD-----DSAPALAIKATM 46
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor,
dissimilatory nitrate reductase; HET: MGD MES; 1.90A
{Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1
PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A*
2jio_A*
Length = 723
Score = 27.4 bits (59), Expect = 7.1
Identities = 19/158 (12%), Positives = 41/158 (25%), Gaps = 1/158 (0%)
Query: 157 YVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHDMATKLRVSFKLQPLATAIFASSPF 216
YV K + GT+ +D R C + + + + S
Sbjct: 118 YVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTYADIDQATCFFIIGSNT 177
Query: 217 AEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDIPMYFILRKKEYYC 276
+E F+ P + + + + + F+
Sbjct: 178 SEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSMAWVII 237
Query: 277 CTDITFRQFMNGALKGRIKEWHPT-LEDWENHLSTLFP 313
++ +F + E P+ E ++ L P
Sbjct: 238 NEELDNPRFWQRYVNFMDAEGKPSDFEGYKAFLENYRP 275
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for
structural genomics, PSI, protein structure initiative,
secsg; 2.05A {Clostridium thermocellum atcc 27405} SCOP:
b.46.1.1 c.65.1.1
Length = 260
Score = 27.1 bits (59), Expect = 8.7
Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 6/147 (4%)
Query: 106 TLQNVHQIKGEIL---GYIQIL-KEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLMK 161
T + V I E + + I+ KEI +N + M P + R +
Sbjct: 69 TFEKVKLINPEYILFPHWSWIIPKEIFENFTCVVFHMTDLPFGRGGSPLQNLIERGIKKT 128
Query: 162 KYMPQVGTHGLDM--MFRTCTTQVSLDFSSEHDMATKLRVSFKLQPLATAIFASSPFAEG 219
K G+D +F + A+K+ + + L T
Sbjct: 129 KISAIKVDGGIDTGDIFFKRDLDLYGTAEEIFMRASKIIFNDMIPELLTKRPVPQKQEGE 188
Query: 220 RINGFQSWRSEIWRHTDSDRTEILPFI 246
+ + D D +I +I
Sbjct: 189 ATVFQRRKPEQSEISPDFDLEKIYDYI 215
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.135 0.413
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,016,690
Number of extensions: 186189
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 9
Length of query: 457
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 361
Effective length of database: 3,365,806
Effective search space: 1215055966
Effective search space used: 1215055966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)