RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase [Candidatus Liberibacter asiaticus str. psy62] (457 letters) >d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} Length = 368 Score = 162 bits (410), Expect = 6e-41 Identities = 55/432 (12%), Positives = 119/432 (27%), Gaps = 73/432 (16%) Query: 26 KPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLAWKEIMDKGNIIGLAN 85 E F +G E E + + + ++ A + N Sbjct: 5 HVSEPFTLGIELEMQVVNPPGYDLSQDSSM-----LIDA------------------VKN 41 Query: 86 PLSKAGISIE-PGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKW 144 ++ + + LEL+T ++++Q G+ +++ + + L I G G +P Sbjct: 42 KITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQ 101 Query: 145 KLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHDMATKLRVSFKLQ 204 K + RY + + V + +S D L + Sbjct: 102 KWQRQEVCDNERYQRTLENFGYLI-----QQATVFGQHVHVGCASGDDAIYLLHGLSRFV 156 Query: 205 PLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDIP 264 P A+ A+SP+ +G F S R I+ + + FE + Sbjct: 157 PHFIALSAASPYMQGTDTRFASSRPNIFSAF---PDNGPMPWVSNWQQFEALFRCLSYTT 213 Query: 265 MYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPAVRLRNCLEMR 324 M ++ + + DI ++ R+ + TL L R Sbjct: 214 MIDSIK--DLH--WDIRPSPHFGT-VEVRVMDTPLTLSHA--VNMAGLIQATAHWLLTER 266 Query: 325 GADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDINKLNNTVPSKGMRSTVRG 384 + + + Y + H T Sbjct: 267 PFKHQEKDYLLYKFNRFQACRYGLEGVITDPH------------------------TGDR 302 Query: 385 QSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKIIHNNQTTADEMLAAYHTRW 444 + L + +++L + ++ L + + + A M Sbjct: 303 RPLTEDTLRLLEKIAPSAHKI--------GASSAIEALHRQVVSGLNEAQLMRDFVAD-- 352 Query: 445 GKSIDPCFEEYA 456 G S+ +++ Sbjct: 353 GGSLIGLVKKHC 364 >d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron transfer flavoprotein alpha subunit {Methylophilus methylotrophus [TaxId: 17]} Length = 123 Score = 27.0 bits (60), Expect = 3.6 Identities = 8/37 (21%), Positives = 15/37 (40%) Query: 10 IVTSIDDLVQHIASGIKPQEEFRIGTEHESFIFSRAD 46 + I +QH+A + T+ + IF+ A Sbjct: 69 VAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAK 105 >d1q32a1 d.136.1.3 (A:79-293) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 215 Score = 26.7 bits (59), Expect = 3.7 Identities = 5/32 (15%), Positives = 13/32 (40%) Query: 145 KLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMF 176 +D + + L++ MP +H ++ Sbjct: 78 AMDATLAVILKKVKLIEITMPPFASHHTKLII 109 >d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195 Score = 25.5 bits (55), Expect = 8.4 Identities = 6/74 (8%), Positives = 14/74 (18%), Gaps = 2/74 (2%) Query: 236 DSDRTEILPFILRDNSNFEHYAQWALD--IPMYFILRKKEYYCCTDITFRQFMNGALKGR 293 +++ L + + + C + Sbjct: 62 ADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIG 121 Query: 294 IKEWHPTLEDWENH 307 PTL+D Sbjct: 122 NMTGFPTLKDKIPA 135 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.135 0.413 Gapped Lambda K H 0.267 0.0659 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,747,678 Number of extensions: 82178 Number of successful extensions: 153 Number of sequences better than 10.0: 1 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 6 Length of query: 457 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 369 Effective length of database: 1,199,356 Effective search space: 442562364 Effective search space used: 442562364 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.7 bits)