RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase
[Candidatus Liberibacter asiaticus str. psy62]
         (457 letters)



>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia
           coli [TaxId: 562]}
          Length = 368

 Score =  162 bits (410), Expect = 6e-41
 Identities = 55/432 (12%), Positives = 119/432 (27%), Gaps = 73/432 (16%)

Query: 26  KPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLAWKEIMDKGNIIGLAN 85
              E F +G E E  + +   +             ++ A                  + N
Sbjct: 5   HVSEPFTLGIELEMQVVNPPGYDLSQDSSM-----LIDA------------------VKN 41

Query: 86  PLSKAGISIE-PGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKW 144
            ++   +  +     LEL+T   ++++Q  G+     +++ +   +  L I G G +P  
Sbjct: 42  KITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQ 101

Query: 145 KLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHDMATKLRVSFKLQ 204
           K     +    RY    +    +               V +  +S  D    L    +  
Sbjct: 102 KWQRQEVCDNERYQRTLENFGYLI-----QQATVFGQHVHVGCASGDDAIYLLHGLSRFV 156

Query: 205 PLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDIP 264
           P   A+ A+SP+ +G    F S R  I+              + +   FE   +      
Sbjct: 157 PHFIALSAASPYMQGTDTRFASSRPNIFSAF---PDNGPMPWVSNWQQFEALFRCLSYTT 213

Query: 265 MYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPAVRLRNCLEMR 324
           M   ++  + +   DI         ++ R+ +   TL                   L  R
Sbjct: 214 MIDSIK--DLH--WDIRPSPHFGT-VEVRVMDTPLTLSHA--VNMAGLIQATAHWLLTER 266

Query: 325 GADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDINKLNNTVPSKGMRSTVRG 384
                  + +      +    Y    +    H                        T   
Sbjct: 267 PFKHQEKDYLLYKFNRFQACRYGLEGVITDPH------------------------TGDR 302

Query: 385 QSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKIIHNNQTTADEMLAAYHTRW 444
           + L +  +++L                    +  ++ L + + +    A  M        
Sbjct: 303 RPLTEDTLRLLEKIAPSAHKI--------GASSAIEALHRQVVSGLNEAQLMRDFVAD-- 352

Query: 445 GKSIDPCFEEYA 456
           G S+    +++ 
Sbjct: 353 GGSLIGLVKKHC 364


>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron
           transfer flavoprotein alpha subunit {Methylophilus
           methylotrophus [TaxId: 17]}
          Length = 123

 Score = 27.0 bits (60), Expect = 3.6
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 10  IVTSIDDLVQHIASGIKPQEEFRIGTEHESFIFSRAD 46
           +   I   +QH+A          + T+  + IF+ A 
Sbjct: 69  VAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAK 105


>d1q32a1 d.136.1.3 (A:79-293) Tyrosyl-DNA phosphodiesterase TDP1
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 215

 Score = 26.7 bits (59), Expect = 3.7
 Identities = 5/32 (15%), Positives = 13/32 (40%)

Query: 145 KLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMF 176
            +D    +   +  L++  MP   +H   ++ 
Sbjct: 78  AMDATLAVILKKVKLIEITMPPFASHHTKLII 109


>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli
           [TaxId: 562]}
          Length = 195

 Score = 25.5 bits (55), Expect = 8.4
 Identities = 6/74 (8%), Positives = 14/74 (18%), Gaps = 2/74 (2%)

Query: 236 DSDRTEILPFILRDNSNFEHYAQWALD--IPMYFILRKKEYYCCTDITFRQFMNGALKGR 293
                +++                 L   +  +    +     C         +      
Sbjct: 62  ADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIG 121

Query: 294 IKEWHPTLEDWENH 307
                PTL+D    
Sbjct: 122 NMTGFPTLKDKIPA 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,747,678
Number of extensions: 82178
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 6
Length of query: 457
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 369
Effective length of database: 1,199,356
Effective search space: 442562364
Effective search space used: 442562364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)