HHsearch alignment for GI: 254781162 and conserved domain: PRK13834
>PRK13834 putative autoinducer synthesis protein; Provisional.
Probab=96.52 E-value=0.032 Score=32.88 Aligned_cols=109 Identities=14% Similarity=0.143 Sum_probs=70.3
Q ss_pred CCEEEEEE-ECCEEEEEEEEEEEEEC------------------CCCEEEEEEEEECCCCCC---CC----HHHHHHHHH
Q ss_conf 60789999-88989999998776118------------------822389976788511138---99----589999999
Q gi|254781162|r 72 LSLSFLCA-EGKRIVGSVRMTPISIE------------------KITGHLLGPIVVHPLYQN---KG----IGRKLISMS 125 (192)
Q Consensus 72 ~~lslVA~-~~~~IVG~i~~~pv~~~------------------~~~~~~LgplaV~P~~rg---~G----iG~~Li~~~ 125 (192)
T Consensus 52 ~~~Yll~~~~~g~v~G~~RLlpTt~p~ML~~~Fp~ll~~~~~p~~~~i~E~SRF~Vd~~~~~~~~~~~~~~~t~~L~~a~ 131 (207)
T PRK13834 52 KPTYILAISDSGRVAGCARLLPALGPTMLADVFPQLLPDGRLNAHPAMIESSRFCVDTTLAEGRGGGSLHEATLTMFAGI 131 (207)
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98699999089848989963378997633470577638999999999899783489776665556887277899999999
Q ss_pred HHHHHHCCCCEEEEEECHH---HHHHCCCEECCCCCEECCCCCCHHHEEEEEC--CCCCCCCC
Q ss_conf 9999613884799840865---7874294874636536689999566698435--77810178
Q gi|254781162|r 126 VDAAEKKGSQVIVLVGDIA---YYSKLGFQAVPWKSLILPAPVDPNRVLFLPL--VQNVAQNI 183 (192)
Q Consensus 126 l~~a~~~g~~~v~l~g~~~---yY~rfGF~~~~~~~l~~p~pv~~~~~l~l~L--~~~~l~~~ 183 (192)
T Consensus 132 ve~a~~~Gi~~ivtV~~~~~eRiL~R~G~~~~r---LG~p~~ig~~~~vA~~l~vd~~tl~~l 191 (207)
T PRK13834 132 IEWSMANGYTEIVTATDLRFERILARAGWPMQR---LGEPKAIGNTMAVAGTLPADADSFERV 191 (207)
T ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHCCCCEEE---CCCCEEECCEEEEEEEEECCHHHHHHH
T ss_conf 999998799889999438999999985995596---768877788799999987699999872