HHsearch alignment for GI: 254781162 and conserved domain: pfam00765
>pfam00765 Autoind_synth Autoinducer synthetase.
Probab=97.55 E-value=0.0021 Score=39.85 Aligned_cols=108 Identities=16% Similarity=0.051 Sum_probs=74.3
Q ss_pred ECCCCCCCCEEEEEEECCEEEEEEEEEEEEE------------C------CCCEEEEEEEEECCCCCCC-C-----HHHH
Q ss_conf 0388887607899998898999999877611------------8------8223899767885111389-9-----5899
Q gi|254781162|r 65 REQGMHDLSLSFLCAEGKRIVGSVRMTPISI------------E------KITGHLLGPIVVHPLYQNK-G-----IGRK 120 (192)
Q Consensus 65 R~~~~~~~~lslVA~~~~~IVG~i~~~pv~~------------~------~~~~~~LgplaV~P~~rg~-G-----iG~~ 120 (192)
T Consensus 37 ~DqyD~~~~~Yll~~~~g~v~g~~RLlpTt~p~ML~d~Fp~ll~~~~~P~~~~iwE~SRf~Vd~~~~~~~~~~~~~~~~~ 116 (182)
T pfam00765 37 FDEYDNLNTTYLLGIKDGRVVCSVRFIETKYPNMITGTFSSYFDDISLPESGNYIESSRFFVDKARARGLLGNLAPISLM 116 (182)
T ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCHHHCCCHHHCCCCCCCCCCCEEEECEEEECCCCCCCCCCCCCHHHHH
T ss_conf 55789999869999989989999813788995524210176628999999999899740379675554444452779999
Q ss_pred HHHHHHHHHHHCCCCEEEEEECH---HHHHHCCCEECCCCCEECCCCCCHHHEEEEEC
Q ss_conf 99999999961388479984086---57874294874636536689999566698435
Q gi|254781162|r 121 LISMSVDAAEKKGSQVIVLVGDI---AYYSKLGFQAVPWKSLILPAPVDPNRVLFLPL 175 (192)
Q Consensus 121 Li~~~l~~a~~~g~~~v~l~g~~---~yY~rfGF~~~~~~~l~~p~pv~~~~~l~l~L 175 (192)
T Consensus 117 L~~~~~~~a~~~Gi~~~v~V~~~~~~rilrr~G~~~~~---lG~p~~~~g~~~vA~~i 171 (182)
T pfam00765 117 LFLSMINYARASGYDGIYTIVSHPMLRILKRSGWPISV---LGEGLSEKNERIYLLHL 171 (182)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCEEE---CCCCEEECCEEEEEEEE
T ss_conf 99999999998799889999768999999986995598---88886679848999997