RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781162|ref|YP_003065575.1| GCN5-related
N-acetyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(192 letters)
>gnl|CDD|32967 COG3153, COG3153, Predicted acetyltransferase [General function
prediction only].
Length = 171
Score = 128 bits (322), Expect = 1e-30
Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Query: 35 LERLEHDSSICAMHADSFGPGRFVRAAVLLREQGMHDLSLSFLCAEGKRIVGSVRMTPIS 94
E +I A+ ++FGPGR + LRE G DL+LS + + +VG + +P++
Sbjct: 8 TETPADIPAIEALTREAFGPGREAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVT 67
Query: 95 I--EKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVLVGDIAYYSKLGFQ 152
+ E++ L P+ V P YQ +GIG L+ ++A G+ +V++GD YYS+ GF+
Sbjct: 68 VGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDPTYYSRFGFE 127
Query: 153 AVPWKSLILPAPVDPNRVLFLPLVQNVAQNIKGIVRCRE 191
L P PV R L L L + G V E
Sbjct: 128 PAAGAKLYAPGPVPDERFLALELGDGALEGPSGTVHYHE 166
>gnl|CDD|144249 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 80
Score = 53.4 bits (129), Expect = 4e-08
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 80 EGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVL 139
E +VG ++ I E + G + V P Y+ KGIG L+ + A + G + I L
Sbjct: 3 EDGELVGFASLSIIDEEGNVAEIEG-LAVDPEYRGKGIGTALLEALEEYARELGLKRIEL 61
Query: 140 VGD------IAYYSKLGFQ 152
IA Y KLGF+
Sbjct: 62 EVLEDNEAAIALYEKLGFK 80
>gnl|CDD|173926 cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes
that characteristically catalyze the transfer of an acyl
group to a substrate. NAT (N-Acyltransferase) is a
large superfamily of enzymes that mostly catalyze the
transfer of an acyl group to a substrate and are
implicated in a variety of functions, ranging from
bacterial antibiotic resistance to circadian rhythms in
mammals. Members include GCN5-related
N-Acetyltransferases (GNAT) such as Aminoglycoside
N-acetyltransferases, Histone N-acetyltransferase (HAT)
enzymes, and Serotonin N-acetyltransferase, which
catalyze the transfer of an acetyl group to a substrate.
The kinetic mechanism of most GNATs involves the ordered
formation of a ternary complex: the reaction begins with
Acetyl Coenzyme A (AcCoA) binding, followed by binding
of substrate, then direct transfer of the acetyl group
from AcCoA to the substrate, followed by product and
subsequent CoA release. Other family members include
Arginine/ornithine N-succinyltransferase, Myristoyl-CoA:
protein N-myristoyltransferase, and
Acyl-homoserinelactone synthase which have a similar
catalytic mechanism but differ in types of acyl groups
transferred. Leucyl/phenylalanyl-tRNA-protein
transferase and FemXAB nonribosomal peptidyltransferases
which catalyze similar peptidyltransferase reactions are
also included.
Length = 65
Score = 49.6 bits (119), Expect = 5e-07
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 75 SFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKGS 134
+ + IVG ++P T ++ G + V P Y+ KGIG L+ + + A ++G+
Sbjct: 1 FLVAEDDGEIVGFASLSPDGSGGDTAYI-GDLAVLPEYRGKGIGSALLEAAEEEARERGA 59
Query: 135 QVIVL 139
+ + L
Sbjct: 60 KRLRL 64
>gnl|CDD|30804 COG0456, RimI, Acetyltransferases [General function prediction
only].
Length = 177
Score = 39.2 bits (90), Expect = 8e-04
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 79 AEGKRIVGSV---RMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKG-S 134
++VG + + GH+ + V P Y+ +GIGR L+ +++ ++G +
Sbjct: 68 LLDGKVVGFLLVRVVDGRPSADHEGHIYN-LAVDPEYRGRGIGRALLDEALERLRERGLA 126
Query: 135 QVIVLV------GDIAYYSKLGFQ 152
IVL I Y KLGF+
Sbjct: 127 DKIVLEVRESNEAAIGLYRKLGFE 150
>gnl|CDD|38606 KOG3396, KOG3396, KOG3396, Glucosamine-phosphate
N-acetyltransferase [Cell wall/membrane/envelope
biogenesis].
Length = 150
Score = 39.1 bits (91), Expect = 8e-04
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 106 IVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVLVGD---IAYYSKLGFQAVP 155
+VV Y+ K +G+ L+ VD A+ G I+L D + +Y K G+
Sbjct: 91 VVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVKFYEKCGYSNAG 143
>gnl|CDD|31439 COG1246, ArgA, N-acetylglutamate synthase and related
acetyltransferases [Amino acid transport and
metabolism].
Length = 153
Score = 36.8 bits (85), Expect = 0.004
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 77 LCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKG-SQ 135
+ +++G + P+ E + L + VHP Y+ G G +L+ + A + G +
Sbjct: 44 IIERDGKVIGCAALHPVLEEDLG--ELRSLAVHPDYRGSGRGERLLERLLADARELGIKE 101
Query: 136 VIVLVGD-IAYYSKLGFQAVPWKSLILPAPV 165
+ VL ++++ GF V LP V
Sbjct: 102 LFVLTTRSPEFFAERGFTRVDKDE--LPEEV 130
>gnl|CDD|38349 KOG3139, KOG3139, KOG3139, N-acetyltransferase [General function
prediction only].
Length = 165
Score = 36.4 bits (84), Expect = 0.005
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 103 LGPIVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVL------VGDIAYYSKLGFQ 152
+ + V Y+ +GIG+ L+ ++DA +G +VL + + Y LGF+
Sbjct: 87 IAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFK 142
>gnl|CDD|31440 COG1247, COG1247, Sortase and related acyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 169
Score = 33.3 bits (76), Expect = 0.047
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 105 PIVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVLV------GDIAYYSKLGFQAV 154
I + P + KG+G+KL+ + A G + +V IA + KLGF+ V
Sbjct: 86 SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEV 141
>gnl|CDD|38426 KOG3216, KOG3216, KOG3216, Diamine acetyltransferase [Amino acid
transport and metabolism].
Length = 163
Score = 32.9 bits (75), Expect = 0.060
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 106 IVVHPLYQNKGIGRKLISMSVDAAEKKG-SQVIVLVGD-----IAYYSKLGFQAV 154
+ V Y+ KGIG KL+ + A+K G +V +V D I Y K+G Q +
Sbjct: 90 LYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDL 144
>gnl|CDD|31633 COG1444, COG1444, Predicted P-loop ATPase fused to an
acetyltransferase [General function prediction only].
Length = 758
Score = 31.1 bits (70), Expect = 0.22
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 54 PGRFVRAAVLLREQGMHDLSLSFLCAEGKRIVGSVRMTPISIEKITGHLLGP-------- 105
P A + E+G L + G+R G+ + P + K
Sbjct: 478 PEGKPVAVWQVAEEGGLSDELIDIWLGGRRPRGN--LIPDLLAKHHRDPEFAKLVGWRIV 535
Query: 106 -IVVHPLYQNKGIGRKLISMSVDAAEK 131
I VHP Q GIG +L+++ ++ A K
Sbjct: 536 RIAVHPELQRMGIGSRLLALLIEEARK 562
>gnl|CDD|38607 KOG3397, KOG3397, KOG3397, Acetyltransferases [General function
prediction only].
Length = 225
Score = 30.4 bits (68), Expect = 0.33
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 72 LSLSFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEK 131
+SL L E ++G R++ + + +VV + G G+ L+ + +
Sbjct: 56 MSLLLLNEENDEVLGHSRLSHLPNRD-HALWVESVVVKKDQRGLGFGKFLMKSTEKWMRE 114
Query: 132 KGSQVIVLVGD--IAYYSKLGFQ 152
KG L D +Y LG++
Sbjct: 115 KGFNEAYLSTDDQCRFYESLGYE 137
>gnl|CDD|30674 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 30.2 bits (68), Expect = 0.36
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 105 PIVVHPLYQNKGIG-RKLISMSVDAAEK 131
+++H LY NK I R+LIS + DA +K
Sbjct: 18 DLMIHSLYSNKEIFLRELISNASDAIDK 45
>gnl|CDD|30055 cd01312, Met_dep_hydrolase_D, Metallo-dependent hydrolases,
subgroup D is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown..
Length = 381
Score = 29.5 bits (66), Expect = 0.55
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 14 IAFFEFICWRRSRWQKIGAFFLERLEHDSSICAMHADSFGPGRFVRAAVLLREQGMHDL 72
+ F E I S G FLER + S + F P A + + DL
Sbjct: 113 VFFNEVIGSNPSAIDFKGETFLERFKRSKS---FESQLFIPAISPHAPYSVHPELAQDL 168
>gnl|CDD|31436 COG1243, ELP3, Histone acetyltransferase [Transcription / Chromatin
structure and dynamics].
Length = 515
Score = 29.1 bits (65), Expect = 0.75
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 112 YQNKGIGRKLISMSVDAAEKKGSQ---VIVLVGDIAYYSKLGFQ 152
+Q++G GR+L+ + A ++G++ VI +G YY KLG++
Sbjct: 462 WQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRKLGYE 505
>gnl|CDD|31856 COG1670, RimL, Acetyltransferases, including N-acetylases of
ribosomal proteins [Translation, ribosomal structure and
biogenesis].
Length = 187
Score = 29.2 bits (64), Expect = 0.80
Identities = 30/161 (18%), Positives = 47/161 (29%), Gaps = 28/161 (17%)
Query: 5 NIELRKFLSIAFFEFICWR------RSRWQKIGAFFLERLEHDSSICAMHADSFGPGRFV 58
+ LR+ W W E + A + G G F
Sbjct: 9 RLLLREVDLEDLELLAEWANDPEVMLFWWLPPPLTPPTSDEELLRLLAEAWEDLGGGAF- 67
Query: 59 RAAVLLREQGMHDLSLSFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIG 118
A+ L+ G ++G + ++ I + P Y KG
Sbjct: 68 --AIELKATGDG------------ELIGVIGLSDIDRAANGDLAEIGYWLDPEYWGKGYA 113
Query: 119 RKLISMSVDAA-EKKGSQVIVLVGD------IAYYSKLGFQ 152
+ + +D A E+ G I D I Y KLGF+
Sbjct: 114 TEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFR 154
>gnl|CDD|32336 COG2153, ElaA, Predicted acyltransferase [General function
prediction only].
Length = 155
Score = 27.9 bits (62), Expect = 1.6
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 84 IVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVLVGDI 143
+V R+ P E +G ++V P + +G+G++L+ +++ A ++ V +G
Sbjct: 61 LVAYARLLPPGAEYEE-VSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQ 119
Query: 144 AY----YSKLGFQAV 154
A+ Y+ GF V
Sbjct: 120 AHLQDFYASFGFVRV 134
>gnl|CDD|99919 cd05536, POLBc_B3, DNA polymerase type-B B3 subfamily catalytic
domain. Archaeal proteins that are involved in DNA
replication are similar to those from eukaryotes. Some
members of the archaea also possess multiple family B
DNA polymerases (B1, B2 and B3). So far there is no
specific function(s) has been assigned for different
members of the archaea type B DNA polymerases.
Phylogenetic analyses of eubacterial, archaeal, and
eukaryotic family B DNA polymerases are support
independent gene duplications during the evolution of
archaeal and eukaryotic family B DNA polymerases.
Structural comparison of the thermostable DNA polymerase
type B to its mesostable homolog suggests several
adaptations to high temperature such as shorter loops,
disulfide bridges, and increasing electrostatic
interaction at subdomain interfaces..
Length = 371
Score = 27.7 bits (62), Expect = 1.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 118 GRKLISMSVDAAEKKGSQVI 137
GR+ I ++ AE+KG +VI
Sbjct: 138 GREYIKTTIKIAEEKGFKVI 157
>gnl|CDD|185755 cd09216, GH64-LPHase-like, glycoside hydrolase family 64:
laminaripentaose-producing, beta-1,3-glucanase
(LPHase)-like. This subfamily is represented by the
laminaripentaose-producing, beta-1,3-glucanase (LPHase)
of Streptomyces matensis and related bacterial and
ascomycete proteins. LPHase is a member of glycoside
hydrolase family 64 (GH64), it is an inverting enzyme
involved in the cleavage of long-chain polysaccharide
beta-1,3-glucans, into specific pentasaccharide
oligomers. LPHase is a two-domain crescent fold
structure: one domain is composed of 10 beta-strands,
eight coming from the N-terminus of the protein and two
from the C-terminal region, and the protein has a second
inserted domain; this cd includes both domains. This
protein has an electronegative, substrate-binding cleft,
and conserved Glu and Asp residues involved in the
cleavage of the beta-1,3-glucan, laminarin, a plant and
fungal cell wall component. Among bacteria, many
beta-1,3-glucanases are implicated in fungal cell wall
degradation. Also included in this family is GluB , the
beta-1,3-glucanase B from Lysobacter enzymogenes Strain
N4-7. Recombinant GluB demonstrated higher relative
activity toward the branched-chain beta-1,3 glucan
substrate zymosan A than toward linear beta-1,3 glucan
substrates. Sometimes these two domains are found
associated with other domains such as in the
Catenulispora acidiphila DSM 44928 carbohydrate binding
family 6 protein in which they are positioned N-terminal
of a carbohydrate binding module, family 6 (CBM_6)
domain. In the Cellulosimicrobium cellulans, glucan
endo-1,3-beta-glucosidase, they are positioned
N-terminal of a RICIN, carbohydrate-binding domain.
Length = 353
Score = 27.8 bits (62), Expect = 2.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 144 AYYSKLGFQAVPWKSLILPA---PVDPNR-VLF 172
+ SKL F+ V +L+ PA P DPN +L
Sbjct: 79 SLGSKLRFKVVTNPALVQPAGWNPSDPNFNILH 111
>gnl|CDD|37958 KOG2747, KOG2747, KOG2747, Histone acetyltransferase (MYST family)
[Chromatin structure and dynamics].
Length = 396
Score = 27.4 bits (60), Expect = 2.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 85 VGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKG 133
G V E + L I+ P YQ KG G+ LI S + + ++G
Sbjct: 245 YGCVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELSRREG 293
>gnl|CDD|88459 cd05704, S1_Rrp5_repeat_hs13, S1_Rrp5_repeat_hs13: Rrp5 is a
trans-acting factor important for biogenesis of both
the 40S and 60S eukaryotic ribosomal subunits. Rrp5
has two distinct regions, an N-terminal region
containing tandemly repeated S1 RNA-binding domains (12
S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1
repeats in Homo sapiens Rrp5) and a C-terminal region
containing tetratricopeptide repeat (TPR) motifs
thought to be involved in protein-protein interactions.
Mutational studies have shown that each region
represents a specific functional domain. Deletions
within the S1-containing region inhibit pre-rRNA
processing at either site A3 or A2, whereas deletions
within the TPR region confer an inability to support
cleavage of A0-A2. This CD includes H. sapiens S1
repeat 13 (hs13). Rrp5 is found in eukaryotes but not
in prokaryotes or archaea..
Length = 72
Score = 27.2 bits (60), Expect = 2.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 50 DSFGPGRFVRAAVLLREQGMHDLSL 74
+ F PG+ VR +L ++ G + LSL
Sbjct: 47 EGFKPGKIVRCCILSKKDGKYQLSL 71
>gnl|CDD|132722 cd02735, RNAP_I_Rpa1_C, Largest subunit (Rpa1) of Eukaryotic RNA
polymerase I (RNAP I), C-terminal domain. RNA
polymerase I (RNAP I) is a multi-subunit protein complex
responsible for the synthesis of rRNA precursor. It
consists of at least 14 different subunits, and the
largest one is homologous to subunit Rpb1 of yeast RNAP
II and subunit beta' of bacterial RNAP. Rpa1 is also
known as Rpa190 in yeast. Structure studies suggest that
different RNAP complexes share a similar crab-claw-shape
structure. The C-terminal domain of Rpb1, the largest
subunit of RNAP II, makes up part of the foot and jaw
structures of RNAP II. The similarity between this
domain and the C-terminal domain of Rpb1, its
counterpart in RNAP II, suggests a similar functional
and structural role.
Length = 309
Score = 27.2 bits (61), Expect = 3.0
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 156 WKSLILPAPVDPNRVLFLPLVQNVAQN-----IKGIVRCREV 192
W + + P+ ++L L +V+ +A+ I GI RC V
Sbjct: 118 WCEVTIKLPLSSPKLLLLSIVEKLARKAVIREIPGITRCFVV 159
>gnl|CDD|34645 COG5040, BMH1, 14-3-3 family protein [Signal transduction
mechanisms].
Length = 268
Score = 27.0 bits (59), Expect = 3.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 2 HDNNIELRKFLSIAFFEFICWRRSRWQKI 30
+ ++E R LS+A+ I RR+ W+ +
Sbjct: 36 QELSVEERNLLSVAYKNVIGARRASWRIV 64
>gnl|CDD|32533 COG2388, COG2388, Predicted acetyltransferase [General function
prediction only].
Length = 99
Score = 26.4 bits (58), Expect = 4.5
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 107 VVHPLYQNKGIGRKLISMSVDAAEKKGSQVI 137
V + +GI +KL+ +++ A + G ++I
Sbjct: 46 YVPDELRGQGIAQKLVEKALEEAREAGLKII 76
>gnl|CDD|37852 KOG2641, KOG2641, KOG2641, Predicted seven transmembrane receptor -
rhodopsin family [Signal transduction mechanisms].
Length = 386
Score = 26.4 bits (58), Expect = 4.5
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 10 KFLSIAFFEFICWRRSRWQKIGAFFLERLEHDSSICAMHADSFGPG 55
KFL + F+ + WQ I L +L + G
Sbjct: 234 KFLCVKLIVFLSF----WQGIVLAILVKLGKIGPSYFDEVGTVAYG 275
>gnl|CDD|38348 KOG3138, KOG3138, KOG3138, Predicted N-acetyltransferase [General
function prediction only].
Length = 187
Score = 26.5 bits (58), Expect = 4.7
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 108 VHPLYQNKGIGRKLISMSVDAAEK----KGSQVIVLVGD---IAYYSKLGFQAV 154
V P Y+NKGIG KL+ + + + V + I +Y K GF+ V
Sbjct: 97 VLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIV 150
>gnl|CDD|34197 COG4552, Eis, Predicted acetyltransferase involved in intracellular
survival and related acetyltransferases [General
function prediction only].
Length = 389
Score = 26.5 bits (58), Expect = 5.1
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 103 LGPIVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVLVG-DIAYYSKLGFQ 152
+ + P Y+ +G R L++ S+ +KG V L Y K G++
Sbjct: 73 IAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHPFSGGIYRKFGYE 123
>gnl|CDD|31400 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 26.3 bits (58), Expect = 5.3
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 105 PIVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVLV 140
P V+HP+ G+ ++ +DAA G IV+V
Sbjct: 21 PKVLHPV-----AGKPMLEHVIDAARALGPDDIVVV 51
>gnl|CDD|145166 pfam01853, MOZ_SAS, MOZ/SAS family. This region of these proteins
has been suggested to be homologous to
acetyltransferases.
Length = 189
Score = 26.1 bits (58), Expect = 5.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 106 IVVHPLYQNKGIGRKLISMS 125
I+ P YQ KG G+ LI S
Sbjct: 86 ILTLPPYQRKGYGKLLIDFS 105
>gnl|CDD|37699 KOG2488, KOG2488, KOG2488, Acetyltransferase (GNAT)
domain-containing protein [General function prediction
only].
Length = 202
Score = 25.7 bits (56), Expect = 7.2
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 108 VHPLYQNKGIGRKLISMSVDAAEKKGSQVIVL------VGDIAYYSKLGF 151
V Y+ KGIG+ L+ A+ + + ++L + + +Y +LGF
Sbjct: 128 VASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYHRLGF 177
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 25.7 bits (56), Expect = 8.2
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 106 IVVHPLYQNKGIGRKLISMSVDAAEKK 132
+VVHP Y+ G+G+ + +++ ++
Sbjct: 247 VVVHPDYRADGLGQLSVIAALEWIIER 273
>gnl|CDD|34632 COG5027, SAS2, Histone acetyltransferase (MYST family) [Chromatin
structure and dynamics].
Length = 395
Score = 25.7 bits (56), Expect = 9.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 94 SIEKIT--GHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKG 133
S EK + + L I+ P YQ +G G+ LI S ++K+G
Sbjct: 254 SKEKESEQDYNLACILTLPPYQRRGYGKLLIDFSYLLSQKEG 295
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.327 0.142 0.434
Gapped
Lambda K H
0.267 0.0819 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,419,837
Number of extensions: 124972
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 36
Length of query: 192
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 103
Effective length of database: 4,340,536
Effective search space: 447075208
Effective search space used: 447075208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (24.8 bits)