RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781162|ref|YP_003065575.1| GCN5-related
N-acetyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(192 letters)
>gnl|CDD|140351 PTZ00330, PTZ00330, acetyltransferase; Provisional.
Length = 147
Score = 45.6 bits (108), Expect = 8e-06
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 97 KITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKGS-QVIVLVGD--IAYYSKLGFQA 153
K GH+ +VV P Y+ +G+GR LIS + A G +VI+ + +A+Y KLGF+A
Sbjct: 80 KCVGHI-EDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYKKLGFRA 138
>gnl|CDD|162430 TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase.
Members of this model belong to the GCN5-related
N-acetyltransferase (GNAT) superfamily. This model
covers prokarotes and the archaea. The seed contains a
characterized accession for Gram negative E. coli. An
untraceable characterized accession (PIR|S66013) for
Gram positive B. subtilis scores well (205.0) in the
full alignment. Characterized members are lacking in the
archaea. Noise cutoff (72.4) was set to exclude M. loti
paralog of rimI. Trusted cutoff (80.0) was set at next
highest scoring member in the mini-database.
Length = 131
Score = 43.1 bits (102), Expect = 5e-05
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 80 EGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVL 139
G ++VG + I H+L I V P YQ +GIGR L+ +D A+ +G I L
Sbjct: 38 IGGKVVGYAGV---QIVLDEAHILN-IAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFL 93
Query: 140 ------VGDIAYYSKLGFQAV 154
+ A Y KLGF +
Sbjct: 94 EVRVSNIAAQALYKKLGFNEI 114
>gnl|CDD|181103 PRK07757, PRK07757, acetyltransferase; Provisional.
Length = 152
Score = 42.5 bits (101), Expect = 7e-05
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 76 FLCAEGKRIVGSVRMTPISIEKITGHLLGPI---VVHPLYQNKGIGRKLISMSVDAAEKK 132
++ E IVG + I L I V Y+ +GIGR L+ ++ A +
Sbjct: 44 YVAEEEGEIVGCCALH------ILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEAREL 97
Query: 133 G-SQVIVLVGDIAYYSKLGFQAVPWKSL 159
G +V L ++ KLGF+ V ++L
Sbjct: 98 GVKRVFALTYQPEFFEKLGFREVDKEAL 125
>gnl|CDD|181904 PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase;
Provisional.
Length = 146
Score = 38.8 bits (91), Expect = 0.001
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 106 IVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVL------VGDIAYYSKLGFQAV 154
I V P YQ +G+GR L+ +D EK+G + L IA Y LGF V
Sbjct: 69 IAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEV 123
>gnl|CDD|179611 PRK03624, PRK03624, putative acetyltransferase; Provisional.
Length = 140
Score = 35.7 bits (83), Expect = 0.008
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 30/102 (29%)
Query: 70 HDLSLSFLCAE-GKRIVGSVRMTPISIEKITGH-----LLGPIVVHPLYQNKGIGRKLIS 123
HD SL FL AE G +VG+V M GH L VHP ++ +GIGR L++
Sbjct: 42 HDPSL-FLVAEVGGEVVGTV-MGGYD-----GHRGWAYYLA---VHPDFRGRGIGRALVA 91
Query: 124 MSVDAAEKK----GS---QVIVLVGD---IAYYSKLGFQAVP 155
EKK G + V + + +Y LG++
Sbjct: 92 ----RLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQD 129
>gnl|CDD|179965 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 34.3 bits (80), Expect = 0.020
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 93 ISIEKITGHLLGPIVVHPLYQNKGIG-RKLISMSVDAAEK 131
E LL +++H LY NK I R+LIS + DA +K
Sbjct: 8 FQAE--VKQLL-HLMIHSLYSNKEIFLRELISNASDAIDK 44
>gnl|CDD|178308 PLN02706, PLN02706, glucosamine 6-phosphate N-acetyltransferase.
Length = 150
Score = 34.3 bits (79), Expect = 0.021
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 100 GHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVL---VGDIAYYSKLGF 151
GH+ +VV + KG+G+K+I + A G ++L + A+Y K G+
Sbjct: 86 GHI-EDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAFYEKCGY 139
>gnl|CDD|178776 PLN03238, PLN03238, probable histone acetyltransferase MYST;
Provisional.
Length = 290
Score = 32.5 bits (74), Expect = 0.070
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 79 AEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKG 133
G IVG +S E + L I+ P YQ KG G+ LIS + + ++++G
Sbjct: 137 DHGSHIVGYFSKEKVSAE---DYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188
>gnl|CDD|117022 pfam08445, FR47, FR47-like protein. The members of this family are
similar to the C-terminal region of the D. melanogaster
hypothetical protein FR47. This protein has been found
to consist of two N-acyltransferase-like domains swapped
with the C-terminal strands.
Length = 86
Score = 31.9 bits (73), Expect = 0.11
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 103 LGPIVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVLVG-----DIAYYSKLGFQA 153
LG + P ++ +G+G +L++ ++G +V Y KLGF+
Sbjct: 24 LGALQTLPEHRRRGLGSRLVAALARGIAERGITPFAVVVAGNTPSRRLYEKLGFRK 79
>gnl|CDD|177721 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 31.6 bits (72), Expect = 0.14
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 77 LC---AEGKRIVGSVRMTPISIEKIT--GHLLGPIVVHPLYQNKGIGRKLISMSVDAAEK 131
LC G +VG S EK + + L I+ P YQ KG G+ LI+ S + +++
Sbjct: 283 LCECDDRGCHMVGY-----FSKEKHSEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKR 337
Query: 132 KG 133
+G
Sbjct: 338 EG 339
>gnl|CDD|132147 TIGR03103, trio_acet_GNAT, GNAT-family acetyltransferase TIGR03103.
Members of this protein family belong to the GNAT
family of acetyltransferases. Each is part of a
conserved three-gene cassette sparsely distributed
across at least twenty different species known so far,
including alpha, beta, and gamma Proteobacteria,
Mycobacterium, and Prosthecochloris, which is a member
of the Chlorobi. The other two members of the cassette
are a probable protease and an asparagine synthetase
family protein.
Length = 547
Score = 30.9 bits (70), Expect = 0.20
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 18/112 (16%)
Query: 58 VRAAVLLREQGMHDLSLSFLCAE---GKRIVGSVRMTPISIEKI-----TGHLLGPIVVH 109
VR +L + H ++++L AE I+G+V + K G L + V
Sbjct: 109 VRVDFVLDHR--HSRAITYLVAEDEASGAIIGTV--MGVDHRKAFNDPEHGSSLWCLAVD 164
Query: 110 PLYQNKGIGRKLISMSVDAAEKKGSQVIVL--VGD----IAYYSKLGFQAVP 155
P + G+G L+ + + +G + L + D IA Y KLGF+ +P
Sbjct: 165 PQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIP 216
>gnl|CDD|132489 TIGR03448, mycothiol_MshD, mycothiol biosynthesis
acetyltransferase. Members of this family are MshD, the
acetyltransferase that catalyzes the final step of
mycothiol biosynthesis in various members of the
Actinomyctes, Mycothiol replaces glutathione in these
species.
Length = 292
Score = 30.1 bits (68), Expect = 0.43
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 25/128 (19%)
Query: 57 FVRAAVLLREQGMHDLSLSFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKG 116
+R LRE G + + + IVG + P T + +VVHP ++ +G
Sbjct: 34 VLRG---LREPG-AGHTRHLVAVDSDPIVGYANLVPARG---TDPAMAELVVHPAHRRRG 86
Query: 117 IGRKLISMSVDAA-EKKGSQVIV-----LVGDIAYYSKLGFQ--------AVPWKSLILP 162
IGR LI A K G ++ V L A S+LG P + L LP
Sbjct: 87 IGRALI----RALLAKGGGRLRVWAHGDLPAARALASRLGLVPTRELLQMRRPLRDLELP 142
Query: 163 APVDPNRV 170
P P+ V
Sbjct: 143 EPQVPDGV 150
>gnl|CDD|162253 TIGR01211, ELP3, histone acetyltransferase, ELP3 family. The
Saccharomyces cerevisiae member YPL086C has been
characterized in vitro as an N-terminal
acetyltransferase for all four core histones. It is a
component of the RNA polymerase II holoenzyme,
designated Elp3p for Elongator Protein 3. Members of
this family are found in eukaryotes and archaea. These
proteins are part of the larger set of GNAT
acetyltransferases.
Length = 522
Score = 29.7 bits (67), Expect = 0.44
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 12/62 (19%)
Query: 101 HLLGPIVVHPL-------YQNKGIGRKLISMSVDAAEKKGSQ---VIVLVGDIAYYSKLG 150
H+ G V P+ +Q++G GR+L+ + A ++GS+ VI +G YY KLG
Sbjct: 453 HVYGSEV--PIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGIGVREYYRKLG 510
Query: 151 FQ 152
++
Sbjct: 511 YE 512
>gnl|CDD|181170 PRK07922, PRK07922, N-acetylglutamate synthase; Validated.
Length = 169
Score = 29.5 bits (67), Expect = 0.56
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 106 IVVHPLYQNKGIGRKLISMSVDAAEKKG-SQVIVLVGDIAYYSKLGFQAVPWKSLILPAP 164
+ V P + +G+G ++ +D A + G S+V VL ++ ++++ GF I P
Sbjct: 76 VAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTFEVEFFARHGFVE------IDGTP 129
Query: 165 VDP 167
V P
Sbjct: 130 VTP 132
>gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
Length = 727
Score = 29.0 bits (66), Expect = 0.74
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 105 PIVVHPLYQNKGIG-------RKLISMSVDAAEKKGSQVIV 138
P+VV PL N G G R+ I + A K+ S VIV
Sbjct: 251 PVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKESSDVIV 291
>gnl|CDD|182510 PRK10514, PRK10514, putative acetyltransferase; Provisional.
Length = 145
Score = 28.0 bits (63), Expect = 1.5
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 92 PISIEKITGHLLGPIVVHPLYQNKGIGRKLIS--------MSVDAAEKKGSQVIVLVGDI 143
P+ ++G + + V P + G+GR L+ ++ D E+ V
Sbjct: 61 PVGFMLLSGGHMEALFVDPDVRGCGVGRMLVEHALSLHPELTTDVNEQNEQAV------- 113
Query: 144 AYYSKLGFQ 152
+Y K+GF+
Sbjct: 114 GFYKKMGFK 122
>gnl|CDD|173359 PTZ00064, PTZ00064, histone acetyltransferase; Provisional.
Length = 552
Score = 27.7 bits (61), Expect = 2.2
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 80 EGKRIVGSVRMTPISIEKIT--GHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKG 133
EG IVG S EK++ + L I+ P YQ KG G+ L+ +S + K+G
Sbjct: 367 EGCHIVGY-----FSKEKVSLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417
>gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional.
Length = 881
Score = 27.3 bits (61), Expect = 2.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 126 VDAAEKKGSQVIVLVGDIAYYSKLGFQAV-----PWKSLI 160
VD + K ++I LV +AYY+K+ F+ V W ++I
Sbjct: 317 VDRLDDK-RKLIELVLSMAYYAKINFEDVFSPIKTWDAII 355
>gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin
synthesis is analogous to polyhydroxyalkanoic acid (PHA)
biosynthesis, except that PHA polymers lack nitrogen and
may be made under nitrogen-limiting conditions.
Length = 864
Score = 26.7 bits (59), Expect = 4.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 104 GPIVVHPLYQNKGIG-------RKLISMSVDAAEKKGSQVIV 138
P+V+ P N G G R I + +AA ++ S VIV
Sbjct: 249 YPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEESSGVIV 290
>gnl|CDD|152258 pfam11822, DUF3342, Domain of unknown function (DUF3342). This
family of proteins are functionally uncharacterized.
This family is found in bacteria. This presumed domain
is typically between 170 to 303 amino acids in length.
The N-terminal half of this family is a BTB-like domain.
Length = 302
Score = 26.2 bits (58), Expect = 4.7
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 1 MHDNNIELRKFLSIAFFEFICWRRSRWQKIGA---FFLERLEHDSSICAMHADSFGPGRF 57
+ D + ++ +++S E W + W+ G+ + R H S+ S+ P F
Sbjct: 214 VADKSWDVLEYISWLTEELESWAKVYWRIWGSINYLYCRRCNHLFSLTDTTHCSYHPAAF 273
Query: 58 VRA 60
Sbjct: 274 SFP 276
>gnl|CDD|183948 PRK13285, PRK13285, flagellar assembly protein FliW; Provisional.
Length = 148
Score = 26.0 bits (58), Expect = 6.1
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 92 PISIEKITGHLLGPIVVHPLYQNKGIGRKLIS 123
P EKIT +L PI+++ K G+++I
Sbjct: 99 PEDPEKITANLQAPIIINK---KKRKGKQVIL 127
>gnl|CDD|184245 PRK13688, PRK13688, hypothetical protein; Provisional.
Length = 156
Score = 26.1 bits (58), Expect = 6.2
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 108 VHPLYQNKGIGRKLISMSVDAAEKKGS--QVIVLVGDIAYYSKLGFQAV 154
V P YQN+G G L VD A+ + I ++ KLGF V
Sbjct: 87 VLPKYQNRGYGEML----VDFAKSFQLPIKTIARNKSKDFWLKLGFTPV 131
>gnl|CDD|177387 PHA02553, 6, baseplate wedge subunit; Provisional.
Length = 611
Score = 25.8 bits (57), Expect = 8.3
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 74 LSFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKG 133
+SF + V S + S E + + IV + GIG+ +I D G
Sbjct: 478 ISFGNQIKEGSVKSSGFSFPSEEDDFSYDVR-IVSTDDDTSTGIGKIVIGPFADKTAIDG 536
Query: 134 SQVIVLVGDIAYYS 147
+ VG + Y
Sbjct: 537 RDLYYEVGTVDYVK 550
>gnl|CDD|183959 PRK13300, PRK13300, tRNA CCA-pyrophosphorylase; Provisional.
Length = 447
Score = 25.6 bits (57), Expect = 8.6
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 8/24 (33%)
Query: 157 KSLILPAPVDPNRVLFLPLVQNVA 180
L++ PVDPNR NVA
Sbjct: 221 DPLVVIDPVDPNR--------NVA 236
>gnl|CDD|149336 pfam08217, DUF1712, Fungal domain of unknown function (DUF1712).
The function of this family of proteins is unknown.
Length = 468
Score = 25.4 bits (56), Expect = 9.9
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 156 WKSLILPAPVDPNRVL----FLPLVQNVAQNIKGIVR 188
W+ L LP D L L L + I+G +R
Sbjct: 140 WQDLKLPPECDLLDELGTVQNLLLDKENYLGIQGFIR 176
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.327 0.142 0.434
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,237,353
Number of extensions: 203857
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 34
Length of query: 192
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,092,969
Effective search space: 425668776
Effective search space used: 425668776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.5 bits)