BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781162|ref|YP_003065575.1| GCN5-related
N-acetyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (192 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781162|ref|YP_003065575.1| GCN5-related N-acetyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 192

 Score =  394 bits (1012), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MHDNNIELRKFLSIAFFEFICWRRSRWQKIGAFFLERLEHDSSICAMHADSFGPGRFVRA 60
           MHDNNIELRKFLSIAFFEFICWRRSRWQKIGAFFLERLEHDSSICAMHADSFGPGRFVRA
Sbjct: 1   MHDNNIELRKFLSIAFFEFICWRRSRWQKIGAFFLERLEHDSSICAMHADSFGPGRFVRA 60

Query: 61  AVLLREQGMHDLSLSFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRK 120
           AVLLREQGMHDLSLSFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRK
Sbjct: 61  AVLLREQGMHDLSLSFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRK 120

Query: 121 LISMSVDAAEKKGSQVIVLVGDIAYYSKLGFQAVPWKSLILPAPVDPNRVLFLPLVQNVA 180
           LISMSVDAAEKKGSQVIVLVGDIAYYSKLGFQAVPWKSLILPAPVDPNRVLFLPLVQNVA
Sbjct: 121 LISMSVDAAEKKGSQVIVLVGDIAYYSKLGFQAVPWKSLILPAPVDPNRVLFLPLVQNVA 180

Query: 181 QNIKGIVRCREV 192
           QNIKGIVRCREV
Sbjct: 181 QNIKGIVRCREV 192


>gi|254780989|ref|YP_003065402.1| GCN5-related N-acetyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 185

 Score = 64.7 bits (156), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 49/79 (62%)

Query: 74  LSFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKG 133
           +SF+C +G RIVG++R TPI I K  G L GP+ V   Y+ +GIG +L  MS  A +  G
Sbjct: 64  MSFVCRDGDRIVGAIRATPIQIGKYKGFLRGPLGVLSEYRKRGIGSRLAYMSFMAIKNSG 123

Query: 134 SQVIVLVGDIAYYSKLGFQ 152
           ++ +++     ++  LGF+
Sbjct: 124 AEFVLIDAKHDWHKHLGFK 142


>gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 363

 Score = 22.3 bits (46), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 11/42 (26%)

Query: 133 GSQVIVLVGDIAYYSKLG----------FQAVPWKSLILPAP 164
           G   I+LV D+A+Y +LG          F  +  KSL LP P
Sbjct: 145 GHTQILLVRDVAHYDRLGTTIDDALGECFDKIA-KSLGLPYP 185


>gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 189

 Score = 21.9 bits (45), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 7/26 (26%), Positives = 16/26 (61%)

Query: 167 PNRVLFLPLVQNVAQNIKGIVRCREV 192
           P R   LP++ N+A+++  + +  +V
Sbjct: 153 PERYFLLPIIDNIARSLPLLAKREDV 178


>gi|254780137|ref|YP_003064550.1| malic enzyme [Candidatus Liberibacter asiaticus str. psy62]
          Length = 779

 Score = 21.6 bits (44), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 160 ILPAPVDPNRVLFL-PLVQNVAQ 181
           ++P+P DPN + ++ P V   A+
Sbjct: 393 LIPSPFDPNLISYIAPAVAKAAE 415


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.327    0.142    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,209
Number of Sequences: 1233
Number of extensions: 4842
Number of successful extensions: 21
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 6
length of query: 192
length of database: 328,796
effective HSP length: 69
effective length of query: 123
effective length of database: 243,719
effective search space: 29977437
effective search space used: 29977437
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 36 (18.5 bits)