Query         gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 214
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed Jun  1 01:43:50 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781163.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2b9s_A Topoisomerase I-like pr  50.0      13 0.00053   16.8   4.7   50  136-195    70-122 (432)
  2 2ooa_A E3 ubiquitin-protein li  38.6      16 0.00067   16.1   2.4   17  101-117    34-50  (52)
  3 2d9s_A CBL E3 ubiquitin protei  37.5      17 0.00071   15.9   2.4   16  101-116    32-47  (53)
  4 2oo9_A E3 ubiquitin-protein li  36.5      17  0.0007   16.0   2.3   32   73-117    12-43  (46)
  5 3he4_A Synzip6; heterodimeric   29.9      18 0.00076   15.7   1.6   30   96-125    24-53  (56)
  6 3g9g_A Suppressor of yeast pro  29.6      26  0.0011   14.7   4.1   33  106-138    56-88  (287)
  7 2kwr_A NMB1343, putative uncha  28.0     9.6  0.0004   17.6  -0.1   32   96-127    59-92  (153)
  8 1fxo_A Glucose-1-phosphate thy  27.2      29  0.0012   14.4   2.5   10  125-134   279-288 (293)
  9 2juj_A E3 ubiquitin-protein li  25.6      23 0.00095   15.1   1.4   33   73-118    15-47  (56)
 10 3f6n_A Virion-associated prote  22.5      35  0.0015   13.8   6.2   60  107-166     6-71  (129)

No 1  
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=49.96  E-value=13  Score=16.77  Aligned_cols=50  Identities=18%  Similarity=0.335  Sum_probs=30.2

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CHHHHHHHHHHHHHHHHHHH
Q ss_conf             2335665300789999999999999999845587636556---88999999999999999853
Q gi|254781163|r  136 KNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDF---DHEKIKSYLTHIKIVRDCLK  195 (214)
Q Consensus       136 knvekdffnskffthfkeyidevdkilmrygiegipltdf---dhekiksylthikivrdclk  195 (214)
                      ..+.++-||..||..|++...+          ++.+.++|   |-.+|..|+...+--|.-+.
T Consensus        70 ~~~~~~~F~~NFf~df~~~l~~----------~~~~i~~~~~cdF~~i~~~~~~~~e~kk~~~  122 (432)
T 2b9s_A           70 DYYRMEVFRRNFFESWREILDK----------RQHPIRRLELCDFEPIYQWHLVQREKKLSRT  122 (432)
T ss_dssp             GGGGCHHHHHHHHHHHHHHHTT----------SCCCCCCGGGEECHHHHHHHHHHHHHHHTSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH----------CCCCCCCHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf             4436659999899999997324----------3855461343586799999999889877449


No 2  
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=38.62  E-value=16  Score=16.11  Aligned_cols=17  Identities=29%  Similarity=0.587  Sum_probs=13.2

Q ss_pred             HCCCCHHHHHHHHHHHH
Q ss_conf             47986368999999999
Q gi|254781163|r  101 LGNPNIEMAKDIAQLFT  117 (214)
Q Consensus       101 lgnpniemakdiaqlft  117 (214)
                      ..+-|||||+||-.-|.
T Consensus        34 Ia~NniemA~~ILrEFv   50 (52)
T 2ooa_A           34 IAQNNVEVARSILREFA   50 (52)
T ss_dssp             HTTTCHHHHHHHHHHHC
T ss_pred             HHHCCHHHHHHHHHHHC
T ss_conf             98622999999999853


No 3  
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=37.52  E-value=17  Score=15.92  Aligned_cols=16  Identities=50%  Similarity=0.742  Sum_probs=13.2

Q ss_pred             HCCCCHHHHHHHHHHH
Q ss_conf             4798636899999999
Q gi|254781163|r  101 LGNPNIEMAKDIAQLF  116 (214)
Q Consensus       101 lgnpniemakdiaqlf  116 (214)
                      ..+-|||||+||-.-|
T Consensus        32 Ia~NniemA~~ILrEF   47 (53)
T 2d9s_A           32 IAHNNIEMAKNILREF   47 (53)
T ss_dssp             HTTTCHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHH
T ss_conf             9861199999999997


No 4  
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=36.51  E-value=17  Score=15.98  Aligned_cols=32  Identities=34%  Similarity=0.562  Sum_probs=19.8

Q ss_pred             HCCCCCHHEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             242010012114566789999999999947986368999999999
Q gi|254781163|r   73 FGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFT  117 (214)
Q Consensus        73 fgekfsydvsikivlainvllfsfviallgnpniemakdiaqlft  117 (214)
                      .++-||++--++-          .   ...+-|+|||+||-.-|.
T Consensus        12 m~~GYs~~~v~rA----------L---~Ia~NniemA~~ILrEF~   43 (46)
T 2oo9_A           12 MSQGYSYQDIQKA----------L---VIAQNNIEMAKNILREFA   43 (46)
T ss_dssp             HHTTBCHHHHHHH----------H---HHTTTCHHHHHHHHHHHC
T ss_pred             HHCCCCHHHHHHH----------H---HHHHCCHHHHHHHHHHHC
T ss_conf             9867769999999----------9---998621999999999871


No 5  
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=29.91  E-value=18  Score=15.74  Aligned_cols=30  Identities=40%  Similarity=0.465  Sum_probs=22.2

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999994798636899999999998312323
Q gi|254781163|r   96 FVIALLGNPNIEMAKDIAQLFTLIDNIENG  125 (214)
Q Consensus        96 fviallgnpniemakdiaqlftlidnieng  125 (214)
                      -++|-|.|.|....||||.|-.-|.|.|..
T Consensus        24 nivarlendnanlekdianlekdianlerd   53 (56)
T 3he4_A           24 NIVARLENDNANLEKDIANLEKDIANLERD   53 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999999655300888898899899988876


No 6  
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=29.59  E-value=26  Score=14.66  Aligned_cols=33  Identities=33%  Similarity=0.445  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             368999999999983123237999999855233
Q gi|254781163|r  106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNV  138 (214)
Q Consensus       106 iemakdiaqlftlidniengygqylekisqknv  138 (214)
                      ..+.||++.+|--.-.||..|++-|.|++.++-
T Consensus        56 k~~~kel~~f~kERa~iEe~Yak~L~KL~k~~~   88 (287)
T 3g9g_A           56 KLLNKDFYLLFKELANLKRNYAQQLRKIIAENE   88 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999999999999998632


No 7  
>2kwr_A NMB1343, putative uncharacterized protein; ADP ribosyltransferase, transferase; NMR {Neisseria meningitidis serogroup B}
Probab=27.99  E-value=9.6  Score=17.61  Aligned_cols=32  Identities=34%  Similarity=0.425  Sum_probs=22.0

Q ss_pred             HHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHH
Q ss_conf             999994798636--89999999999831232379
Q gi|254781163|r   96 FVIALLGNPNIE--MAKDIAQLFTLIDNIENGYG  127 (214)
Q Consensus        96 fviallgnpnie--makdiaqlftlidniengyg  127 (214)
                      |--.+...|-|.  ..|++|.-|.--+++||||-
T Consensus        59 ~ds~~~~gcyiStTt~k~VA~rFATt~glenGyV   92 (153)
T 2kwr_A           59 IETGLYDGCYISTTTDKEIAKKFATSSGIENGYI   92 (153)
T ss_dssp             HHHCSSSSSSEEEEEESSHHHHHHHHTTTTEEEE
T ss_pred             ECCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCEE
T ss_conf             4157766415786107999987604578666589


No 8  
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 1mp5_A* 1mp3_A* 1mp4_A*
Probab=27.18  E-value=29  Score=14.38  Aligned_cols=10  Identities=60%  Similarity=1.335  Sum_probs=4.5

Q ss_pred             HHHHHHHHHH
Q ss_conf             3799999985
Q gi|254781163|r  125 GYGQYLEKIS  134 (214)
Q Consensus       125 gygqylekis  134 (214)
                      +|||||+++-
T Consensus       279 ~y~~~l~~~i  288 (293)
T 1fxo_A          279 GYGQYLKRLL  288 (293)
T ss_dssp             HHHHHHHHTT
T ss_pred             CHHHHHHHHH
T ss_conf             4899999998


No 9  
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=25.64  E-value=23  Score=15.07  Aligned_cols=33  Identities=33%  Similarity=0.516  Sum_probs=20.1

Q ss_pred             HCCCCCHHEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             2420100121145667899999999999479863689999999999
Q gi|254781163|r   73 FGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTL  118 (214)
Q Consensus        73 fgekfsydvsikivlainvllfsfviallgnpniemakdiaqlftl  118 (214)
                      .++.+|+|--++-.             ...+-|+|||+||-.-|..
T Consensus        15 m~~GYs~~~v~rAL-------------~Ia~NniemA~~ILrEFvs   47 (56)
T 2juj_A           15 MSQGYSYQDIQKAL-------------VIAQNNIEMAKNILREFVS   47 (56)
T ss_dssp             HTTTCCHHHHHHHH-------------HHTTTCSHHHHHHHHHSCC
T ss_pred             HHCCCCHHHHHHHH-------------HHHHCCHHHHHHHHHHHCC
T ss_conf             98554499999999-------------9987119999999999826


No 10 
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, DNA-binding protein; 3.10A {Cauliflower mosaic virus}
Probab=22.54  E-value=35  Score=13.80  Aligned_cols=60  Identities=17%  Similarity=0.360  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHH---HHHHHHHHC
Q ss_conf             689999999999831232379999998552335665300---789999999999---999999845
Q gi|254781163|r  107 EMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNS---KFFTHFKEYIDE---VDKILMRYG  166 (214)
Q Consensus       107 emakdiaqlftlidniengygqylekisqknvekdffns---kffthfkeyide---vdkilmryg  166 (214)
                      +.++.|.|+.+.+..+++.--|+|++++..+-++.-..+   |.....-+-||.   -++|+-+..
T Consensus         6 ~I~~ei~~~l~~~k~l~~di~~il~~~~S~~~~~~~lEsiAAKIIkDis~~I~~C~C~k~i~e~l~   71 (129)
T 3f6n_A            6 QIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLINDCPCNKEILEALG   71 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
T ss_conf             999999999999999999999999742799720346899999999999999871764167898755


Done!