Query gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 214 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed Jun 1 01:43:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781163.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2b9s_A Topoisomerase I-like pr 50.0 13 0.00053 16.8 4.7 50 136-195 70-122 (432) 2 2ooa_A E3 ubiquitin-protein li 38.6 16 0.00067 16.1 2.4 17 101-117 34-50 (52) 3 2d9s_A CBL E3 ubiquitin protei 37.5 17 0.00071 15.9 2.4 16 101-116 32-47 (53) 4 2oo9_A E3 ubiquitin-protein li 36.5 17 0.0007 16.0 2.3 32 73-117 12-43 (46) 5 3he4_A Synzip6; heterodimeric 29.9 18 0.00076 15.7 1.6 30 96-125 24-53 (56) 6 3g9g_A Suppressor of yeast pro 29.6 26 0.0011 14.7 4.1 33 106-138 56-88 (287) 7 2kwr_A NMB1343, putative uncha 28.0 9.6 0.0004 17.6 -0.1 32 96-127 59-92 (153) 8 1fxo_A Glucose-1-phosphate thy 27.2 29 0.0012 14.4 2.5 10 125-134 279-288 (293) 9 2juj_A E3 ubiquitin-protein li 25.6 23 0.00095 15.1 1.4 33 73-118 15-47 (56) 10 3f6n_A Virion-associated prote 22.5 35 0.0015 13.8 6.2 60 107-166 6-71 (129) No 1 >2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Probab=49.96 E-value=13 Score=16.77 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=30.2 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CHHHHHHHHHHHHHHHHHHH Q ss_conf 2335665300789999999999999999845587636556---88999999999999999853 Q gi|254781163|r 136 KNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDF---DHEKIKSYLTHIKIVRDCLK 195 (214) Q Consensus 136 knvekdffnskffthfkeyidevdkilmrygiegipltdf---dhekiksylthikivrdclk 195 (214) ..+.++-||..||..|++...+ ++.+.++| |-.+|..|+...+--|.-+. T Consensus 70 ~~~~~~~F~~NFf~df~~~l~~----------~~~~i~~~~~cdF~~i~~~~~~~~e~kk~~~ 122 (432) T 2b9s_A 70 DYYRMEVFRRNFFESWREILDK----------RQHPIRRLELCDFEPIYQWHLVQREKKLSRT 122 (432) T ss_dssp GGGGCHHHHHHHHHHHHHHHTT----------SCCCCCCGGGEECHHHHHHHHHHHHHHHTSC T ss_pred CCCCCHHHHHHHHHHHHHHHHH----------CCCCCCCHHHCCCHHHHHHHHHHHHHHHHCC T ss_conf 4436659999899999997324----------3855461343586799999999889877449 No 2 >2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Probab=38.62 E-value=16 Score=16.11 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=13.2 Q ss_pred HCCCCHHHHHHHHHHHH Q ss_conf 47986368999999999 Q gi|254781163|r 101 LGNPNIEMAKDIAQLFT 117 (214) Q Consensus 101 lgnpniemakdiaqlft 117 (214) ..+-|||||+||-.-|. T Consensus 34 Ia~NniemA~~ILrEFv 50 (52) T 2ooa_A 34 IAQNNVEVARSILREFA 50 (52) T ss_dssp HTTTCHHHHHHHHHHHC T ss_pred HHHCCHHHHHHHHHHHC T ss_conf 98622999999999853 No 3 >2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} Probab=37.52 E-value=17 Score=15.92 Aligned_cols=16 Identities=50% Similarity=0.742 Sum_probs=13.2 Q ss_pred HCCCCHHHHHHHHHHH Q ss_conf 4798636899999999 Q gi|254781163|r 101 LGNPNIEMAKDIAQLF 116 (214) Q Consensus 101 lgnpniemakdiaqlf 116 (214) ..+-|||||+||-.-| T Consensus 32 Ia~NniemA~~ILrEF 47 (53) T 2d9s_A 32 IAHNNIEMAKNILREF 47 (53) T ss_dssp HTTTCHHHHHHHHHHH T ss_pred HHHCCHHHHHHHHHHH T ss_conf 9861199999999997 No 4 >2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} Probab=36.51 E-value=17 Score=15.98 Aligned_cols=32 Identities=34% Similarity=0.562 Sum_probs=19.8 Q ss_pred HCCCCCHHEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 242010012114566789999999999947986368999999999 Q gi|254781163|r 73 FGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFT 117 (214) Q Consensus 73 fgekfsydvsikivlainvllfsfviallgnpniemakdiaqlft 117 (214) .++-||++--++- . ...+-|+|||+||-.-|. T Consensus 12 m~~GYs~~~v~rA----------L---~Ia~NniemA~~ILrEF~ 43 (46) T 2oo9_A 12 MSQGYSYQDIQKA----------L---VIAQNNIEMAKNILREFA 43 (46) T ss_dssp HHTTBCHHHHHHH----------H---HHTTTCHHHHHHHHHHHC T ss_pred HHCCCCHHHHHHH----------H---HHHHCCHHHHHHHHHHHC T ss_conf 9867769999999----------9---998621999999999871 No 5 >3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene} Probab=29.91 E-value=18 Score=15.74 Aligned_cols=30 Identities=40% Similarity=0.465 Sum_probs=22.2 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999994798636899999999998312323 Q gi|254781163|r 96 FVIALLGNPNIEMAKDIAQLFTLIDNIENG 125 (214) Q Consensus 96 fviallgnpniemakdiaqlftlidnieng 125 (214) -++|-|.|.|....||||.|-.-|.|.|.. T Consensus 24 nivarlendnanlekdianlekdianlerd 53 (56) T 3he4_A 24 NIVARLENDNANLEKDIANLEKDIANLERD 53 (56) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 999999655300888898899899988876 No 6 >3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae} Probab=29.59 E-value=26 Score=14.66 Aligned_cols=33 Identities=33% Similarity=0.445 Sum_probs=26.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 368999999999983123237999999855233 Q gi|254781163|r 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNV 138 (214) Q Consensus 106 iemakdiaqlftlidniengygqylekisqknv 138 (214) ..+.||++.+|--.-.||..|++-|.|++.++- T Consensus 56 k~~~kel~~f~kERa~iEe~Yak~L~KL~k~~~ 88 (287) T 3g9g_A 56 KLLNKDFYLLFKELANLKRNYAQQLRKIIAENE 88 (287) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999999999999998632 No 7 >2kwr_A NMB1343, putative uncharacterized protein; ADP ribosyltransferase, transferase; NMR {Neisseria meningitidis serogroup B} Probab=27.99 E-value=9.6 Score=17.61 Aligned_cols=32 Identities=34% Similarity=0.425 Sum_probs=22.0 Q ss_pred HHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHH Q ss_conf 999994798636--89999999999831232379 Q gi|254781163|r 96 FVIALLGNPNIE--MAKDIAQLFTLIDNIENGYG 127 (214) Q Consensus 96 fviallgnpnie--makdiaqlftlidniengyg 127 (214) |--.+...|-|. ..|++|.-|.--+++||||- T Consensus 59 ~ds~~~~gcyiStTt~k~VA~rFATt~glenGyV 92 (153) T 2kwr_A 59 IETGLYDGCYISTTTDKEIAKKFATSSGIENGYI 92 (153) T ss_dssp HHHCSSSSSSEEEEEESSHHHHHHHHTTTTEEEE T ss_pred ECCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCEE T ss_conf 4157766415786107999987604578666589 No 8 >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 1mp5_A* 1mp3_A* 1mp4_A* Probab=27.18 E-value=29 Score=14.38 Aligned_cols=10 Identities=60% Similarity=1.335 Sum_probs=4.5 Q ss_pred HHHHHHHHHH Q ss_conf 3799999985 Q gi|254781163|r 125 GYGQYLEKIS 134 (214) Q Consensus 125 gygqylekis 134 (214) +|||||+++- T Consensus 279 ~y~~~l~~~i 288 (293) T 1fxo_A 279 GYGQYLKRLL 288 (293) T ss_dssp HHHHHHHHTT T ss_pred CHHHHHHHHH T ss_conf 4899999998 No 9 >2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} Probab=25.64 E-value=23 Score=15.07 Aligned_cols=33 Identities=33% Similarity=0.516 Sum_probs=20.1 Q ss_pred HCCCCCHHEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 2420100121145667899999999999479863689999999999 Q gi|254781163|r 73 FGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTL 118 (214) Q Consensus 73 fgekfsydvsikivlainvllfsfviallgnpniemakdiaqlftl 118 (214) .++.+|+|--++-. ...+-|+|||+||-.-|.. T Consensus 15 m~~GYs~~~v~rAL-------------~Ia~NniemA~~ILrEFvs 47 (56) T 2juj_A 15 MSQGYSYQDIQKAL-------------VIAQNNIEMAKNILREFVS 47 (56) T ss_dssp HTTTCCHHHHHHHH-------------HHTTTCSHHHHHHHHHSCC T ss_pred HHCCCCHHHHHHHH-------------HHHHCCHHHHHHHHHHHCC T ss_conf 98554499999999-------------9987119999999999826 No 10 >3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, DNA-binding protein; 3.10A {Cauliflower mosaic virus} Probab=22.54 E-value=35 Score=13.80 Aligned_cols=60 Identities=17% Similarity=0.360 Sum_probs=39.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHH---HHHHHHHHC Q ss_conf 689999999999831232379999998552335665300---789999999999---999999845 Q gi|254781163|r 107 EMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNS---KFFTHFKEYIDE---VDKILMRYG 166 (214) Q Consensus 107 emakdiaqlftlidniengygqylekisqknvekdffns---kffthfkeyide---vdkilmryg 166 (214) +.++.|.|+.+.+..+++.--|+|++++..+-++.-..+ |.....-+-||. -++|+-+.. T Consensus 6 ~I~~ei~~~l~~~k~l~~di~~il~~~~S~~~~~~~lEsiAAKIIkDis~~I~~C~C~k~i~e~l~ 71 (129) T 3f6n_A 6 QIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLINDCPCNKEILEALG 71 (129) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC T ss_conf 999999999999999999999999742799720346899999999999999871764167898755 Done!