RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781163|ref|YP_003065576.1| hypothetical protein
CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62]
(214 letters)
>2efl_A Formin-binding protein 1; EFC domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.61A {Homo sapiens} (A:1-264)
Length = 264
Score = 32.2 bits (72), Expect = 0.064
Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 2/106 (1%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTH--FKEYIDEVDKILM 163
I++ + + IE Y + L +S+K K + +
Sbjct: 27 IDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEXN 86
Query: 164 RYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRNDW 209
Y + +++ +I L +K N H ++ +
Sbjct: 87 DYAGQHEVISENXASQIIVDLARYVQELKQERKSNFHDGRKAQQHI 132
>2efk_A CDC42-interacting protein 4; EFC domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.30A {Homo sapiens} (A:)
Length = 301
Score = 31.5 bits (70), Expect = 0.092
Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 6/110 (5%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDF------FNSKFFTHFKEYIDEVD 159
+++ + +E Y + L + +K + K F + + EV+
Sbjct: 20 LDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVN 79
Query: 160 KILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRNDW 209
+ + L+ ++ Y K R ++ ++L N +
Sbjct: 80 DFAGQRELVAENLSVRVCLELTKYSQEXKQERKXHFQEGRRAQQQLENGF 129
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,
alternative splicing, coiled coil, cytoplasmic vesicle,
endocytosis, phosphoprotein, polymorphism; 2.78A {Homo
sapiens} (A:1-124,A:261-486)
Length = 350
Score = 28.9 bits (63), Expect = 0.57
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 9/81 (11%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRY 165
+ D+ IE Y Q L + +++ + ++ T ++ R
Sbjct: 35 HRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGT-VEKAWMAFMSEAERV 93
Query: 166 GIEGIPLTDFDHEKIKSYLTH 186
H ++K+ L +
Sbjct: 94 SE--------LHLEVKASLMN 106
>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA
replication; HET: DNA; 2.30A {Homo sapiens}
(B:1-11,B:65-185)
Length = 132
Score = 28.7 bits (64), Expect = 0.57
Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHI 187
+ LEK+ +++ F ++ E+ K+L+ + + IP ++I++ + +
Sbjct: 16 EKLEKMRDHERKEETFTPMPSPYY----MELTKLLLNHASDNIP----KADEIRTLVKDM 67
Query: 188 KIVR 191
R
Sbjct: 68 WDTR 71
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine
biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE
LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* (A:)
Length = 201
Score = 28.5 bits (63), Expect = 0.69
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV 190
F +F +KE VD ++ I + + Y I +V
Sbjct: 84 FVPGEFPHEYKEKFILVDNEHRLKKVQXIE-GGYLDLGVTYYXDTIHVV 131
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function;
1.50A {Mycobacterium tuberculosis} (A:19-74)
Length = 56
Score = 28.4 bits (64), Expect = 0.77
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
+ + + I +P+ D +++ LT RD + K
Sbjct: 9 LTAAAQYXREHDIGALPICG-DDDRLHGXLTD----RDIVIK 45
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.10A {Sulfolobus tokodaii str}
(A:78-133)
Length = 56
Score = 28.0 bits (63), Expect = 0.99
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
I + ++ I +P+ D D +K ++ +RD +
Sbjct: 9 ITGALALXRQFNIRHLPVVD-DKGNLKGIIS----IRDITR 44
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport;
2.94A {Thermus thermophilus HB8} PDB: 2yvx_A (A:227-294)
Length = 68
Score = 28.1 bits (63), Expect = 1.1
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
+EV +++ Y +P+ D + ++ +T V D L
Sbjct: 12 QEEVARLMADYDFTVLPVVD-EEGRLVGIVT----VDDVLD 47
>3hah_A Human pacsin1 F-BAR; pacsin,syndapin,FAP52,F-BAR, coiled
coil, cytoplasm, endocytosis, phosphoprotein,
polymorphism, SH3 domain; 2.77A {Homo sapiens} PDB:
3hai_A (A:1-125,A:260-325)
Length = 191
Score = 27.6 bits (61), Expect = 1.4
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFT---HFKEYIDEVDKI 161
+ D+ IE YGQ L +++ + ++ + + + E DK+
Sbjct: 36 HRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKV 94
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP, ATP-binding, kinase,
nucleotide-binding, serine/threonine-protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
2oox_G* 2ooy_G* (G:75-120,G:191-251)
Length = 107
Score = 27.6 bits (61), Expect = 1.4
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHY 201
+ +V K+L I +P+ + + + + ++ D +
Sbjct: 60 VYDVIKMLAEKNISAVPIVN-SEGTLLNVYESVDVMHLIQDGDYSNL 105
>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST
JOHN'S WORT, depression, allergy, PR-10 protein,
cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A
{Hypericum perforatum} (A:)
Length = 165
Score = 26.6 bits (58), Expect = 2.4
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRD 192
F + T+ DE+D D + I+ + +K+
Sbjct: 65 FVDGHPLTYMLHKFDEIDAANFYCKYTLFE-GDVLRDNIEKVVYEVKLEAV 114
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain,
FCH, adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae} (A:1-254)
Length = 254
Score = 26.8 bits (58), Expect = 2.5
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 1/104 (0%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSK-FFTHFKEYIDEVDKILMR 164
+ KD LF + N++ Y Q L KI +N + + E+
Sbjct: 56 KLLNKDFYLLFKELANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFN 115
Query: 165 YGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRND 208
E + D E++KS L + L + + KE +
Sbjct: 116 SLGELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVEN 159
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1;
transferase, CBS domain, lipid synthesis, fatty acid
biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB:
2uv5_A* 2uv6_A* 2uv7_A* (A:92-152)
Length = 61
Score = 26.5 bits (59), Expect = 2.7
Identities = 5/41 (12%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
++ + L+ + + + D +++ +K ++ + D L+
Sbjct: 21 LETIINRLVEAEVHRLVVVD-ENDVVKGIVS----LSDILQ 56
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
(A:160-217)
Length = 58
Score = 26.5 bits (59), Expect = 2.8
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
++ ++IL + IE +PL D + ++ +T ++D K
Sbjct: 13 LETAERILHEHRIEKLPLVD-NSGRLSGLIT----IKDIEK 48
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding,
protein-solvent interaction, oxidoreductase; HET: NAD;
1.95A {Haloarcula marismortui} (A:)
Length = 303
Score = 26.3 bits (57), Expect = 2.9
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
I L D++ + + + D +
Sbjct: 275 IVEWDLDDYEQDLMADAAEKLSDQYDKIS 303
>1e09_A PRU AV 1; allergen, major cherry allergen,
pathogenesis-related protein, heteronuclear structure;
NMR {Prunus avium} (A:)
Length = 159
Score = 26.2 bits (57), Expect = 3.1
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 148 FTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRD 192
+ + K ID +DK Y I D + ++ K+V
Sbjct: 64 YGYVKHKIDSIDKENYSYSYTLIE-GDALGDTLEKISYETKLVAS 107
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} (A:)
Length = 178
Score = 26.3 bits (57), Expect = 3.3
Identities = 2/79 (2%), Positives = 17/79 (21%), Gaps = 12/79 (15%)
Query: 139 EKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIP---LTDFDHEKIKSYLTH--------- 186
+ + + V + + + P + +
Sbjct: 100 KDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDEL 159
Query: 187 IKIVRDCLKKDNIHYAKEL 205
+ + ++ +++
Sbjct: 160 MMRLMAAMEIFTAQQQEDI 178
>3ddj_A CBS domain-containing protein; NP_344512.1, structural
genomics, joint center for structural genomics, JCSG;
HET: AMP; 1.80A {Sulfolobus solfataricus} (A:155-205)
Length = 51
Score = 26.0 bits (58), Expect = 3.5
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHE 178
+D+ K+ +R G +P+ D D++
Sbjct: 21 LDQAVKLXLRRGFRRLPVIDDDNK 44
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
(A:97-159)
Length = 63
Score = 26.1 bits (58), Expect = 3.7
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHE-KIKSYLTHIKIVRDCLKK 196
+ E +++ RY I G+P+ + K+ +T+ RD
Sbjct: 13 VSEAEELXQRYRISGVPIVETLANRKLVGIITN----RDXRFI 51
>3ddj_A CBS domain-containing protein; NP_344512.1, structural
genomics, joint center for structural genomics, JCSG;
HET: AMP; 1.80A {Sulfolobus solfataricus} (A:104-154)
Length = 51
Score = 26.1 bits (58), Expect = 3.7
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVR 191
I + +P+ D ++K +T + +
Sbjct: 9 EFTAINIXVTRNFGSLPVVD-INDKPVGIVTEREFLL 44
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport
protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A
(A:204-278)
Length = 75
Score = 25.9 bits (57), Expect = 4.0
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
+EV +++ Y +P+ D + ++ +T V D L
Sbjct: 15 QEEVARLMADYDFTVLPVVD-EEGRLVGIVT----VDDVLD 50
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain
ATCC 700825 / FA 1090), DSBC, structural genomics,
unknown function; 2.00A {Neisseria gonorrhoeae fa 1090}
(A:)
Length = 147
Score = 25.9 bits (56), Expect = 4.1
Identities = 5/47 (10%), Positives = 10/47 (21%), Gaps = 3/47 (6%)
Query: 125 GYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIP 171
+ K + E + ++G G P
Sbjct: 68 QPDRAKAWTDWXRKGKFPVGGSIC---DNPVAETTSLGEQFGFNGTP 111
>2v65_A LDH-A, L-lactate dehydrogenase A chain; oxidoreductase, NAD,
FISH, cytoplasm, glycolysis, psychrophIle; 2.35A
{Champsocephalus gunnari} (A:)
Length = 331
Score = 26.1 bits (56), Expect = 4.2
Identities = 3/29 (10%), Positives = 12/29 (41%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
+ + L + ++++ + V+ L
Sbjct: 302 VIHMTLKAEEEKQLQKSAETLWGVQKELT 330
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic,
bound nucleotide, AMP, NADH, structural genomics, PSI-2;
HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
(A:37-98)
Length = 62
Score = 25.8 bits (57), Expect = 4.4
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
I E L + I + +TD + T RD +K
Sbjct: 10 IGEAAGTLHAHKIGAVVVTD-ADGVVLGIFT----ERDLVKA 46
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid
cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} (A:)
Length = 309
Score = 25.7 bits (55), Expect = 4.9
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
I +PL + + + + ++ D LK
Sbjct: 279 ILELPLNEEEMALLNASAKAVRATLDTLKS 308
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} (A:174-229)
Length = 56
Score = 25.7 bits (57), Expect = 5.0
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
+ E ++IL R +P+ + D +++ + + D K
Sbjct: 21 LKEANEILQRSKKGKLPIVN-DCDELVAIIA----RTDLKK 56
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant
protein, PR- 10 protein, pathogenesis-related protein,
allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A*
1xdf_A* 2k7h_A (A:)
Length = 158
Score = 25.8 bits (56), Expect = 5.0
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 139 EKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRD 192
+ F + I+ +D+ + Y + + I+ K+V
Sbjct: 55 KLTFIEGGESKYVLHKIEAIDEANLGYNYSIVG-GVGLPDTIEKISFETKLVEG 107
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for
structural genomics, secsg, protein structure
initiative, PSI, oxidoreductase; 3.01A {Clostridium
thermocellum} (A:)
Length = 318
Score = 25.7 bits (55), Expect = 5.3
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
+ LT + E ++ +K V + +K
Sbjct: 288 VLQFNLTPEEEEALRFSAEQVKKVLNEVKN 317
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid
cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme}
(A:144-310)
Length = 167
Score = 25.5 bits (55), Expect = 5.5
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
I I L D + ++ + L+
Sbjct: 135 IYEINLDQADLDLLQKSAKIVDENCKMLES 164
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} (A:204-282)
Length = 79
Score = 25.4 bits (56), Expect = 5.6
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
+ EV + +Y IE +P+ + + D LK
Sbjct: 37 VHEVALKMAKYSIEQLPVIR-GEGDLIGLIR----DFDLLK 72
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic
domain, CBS domains, ION channel regulatory subunit,
transport protein; 3.10A {Torpedo marmorata} (A:1-81)
Length = 81
Score = 25.5 bits (56), Expect = 5.6
Identities = 3/42 (7%), Positives = 12/42 (28%), Gaps = 5/42 (11%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHE-KIKSYLTHIKIVRDCLK 195
++ +L + ++ P D + + +
Sbjct: 32 YGDLLHVLRQTKLKFFPFVDTPDTNTLLGSID----RTEVEG 69
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET:
NAD; 2.40A {Sus scrofa} (A:156-333)
Length = 178
Score = 25.6 bits (55), Expect = 5.7
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
+EG+P+ DF EK+ + ++ +
Sbjct: 144 VEGLPINDFSREKMDLTAKELAEEKETAFE 173
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} (A:)
Length = 313
Score = 25.3 bits (54), Expect = 5.9
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
+ I L + + IK + +K
Sbjct: 283 VVSIELDKDEIIAFRKSAEIIKKYCEEVKN 312
>1b8p_A Protein (malate dehydrogenase); 1.90A {Aquaspirillum
arcticum} (A:)
Length = 329
Score = 25.3 bits (54), Expect = 6.1
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
++G+ + F E+I L + ++ ++
Sbjct: 297 VQGLSIDAFSQERINVTLNELLEEQNGVQH 326
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic
acid cycle, structural genomics; HET: ADP; 2.25A
{Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
(A:)
Length = 324
Score = 25.3 bits (54), Expect = 6.1
Identities = 3/30 (10%), Positives = 9/30 (30%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
I I L + + + + + +
Sbjct: 289 IIEIDLDKDEKAQFDKSVASVAGLCEACIG 318
>3ddj_A CBS domain-containing protein; NP_344512.1, structural
genomics, joint center for structural genomics, JCSG;
HET: AMP; 1.80A {Sulfolobus solfataricus} (A:233-296)
Length = 64
Score = 25.4 bits (56), Expect = 6.3
Identities = 3/37 (8%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVR 191
++ + I + + + I+ +T ++
Sbjct: 14 VNRAAAEXIVKRIGSLLILN-KDNTIRGIITERDLLI 49
>2huj_A LIN2004 protein; hypothetical protein, structural genomics,
PSI- 2, protein structure initiative, joint center for
structural genomics, JCSG; 1.74A {Listeria innocua} (A:)
Length = 140
Score = 25.1 bits (55), Expect = 6.9
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 9/62 (14%)
Query: 101 LGNPNIEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDK 160
L E+ QL + Y ++ DF+ K ++DE +
Sbjct: 15 LYFQGXELLIRTEQLLLQNEKNWELY----LSNREEEKPFDFY-----KDXKPFVDEAKR 65
Query: 161 IL 162
Sbjct: 66 CA 67
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii}
(A:)
Length = 104
Score = 25.3 bits (55), Expect = 6.9
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 132 KISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHE 178
I +E+ + K DE I RYG+ +P F +
Sbjct: 32 LILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKD 78
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP,
PSI, MCSG, structural genomics; HET: AMP; 2.75A
{Klebsiella pneumoniae subsp} (A:1-78)
Length = 78
Score = 25.0 bits (55), Expect = 7.0
Identities = 9/52 (17%), Positives = 14/52 (26%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELR 206
+ + L I L + S L + R +K LR
Sbjct: 23 WKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLR 74
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens} (A:1-247)
Length = 247
Score = 25.3 bits (54), Expect = 7.1
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRY 165
K++A IE Y + + K+++ + F + + +K+ +
Sbjct: 31 QISTKELADFVRERATIEEAYSRSMTKLAKSASNYSQLGT-FAPVWDVFKTSTEKLANCH 89
Query: 166 GIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRNDW 209
L + E K +K + K+ + E
Sbjct: 90 LDLVRKLQELIKEVQKYGEEQVKSHKKT--KEEVAGTLEAVQTI 131
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex,
oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum}
(A:152-322)
Length = 171
Score = 25.2 bits (54), Expect = 7.2
Identities = 3/30 (10%), Positives = 9/30 (30%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
+ + L + K + K ++
Sbjct: 138 VIELQLNSEEKAKFDEAIAETKRMKALAHH 167
>3gnj_A Thioredoxin domain protein; APC92103, structural genomics,
PSI-2, protein structure initiative; 1.99A
{Desulfitobacterium hafniense dcb-2} (A:)
Length = 111
Score = 25.0 bits (54), Expect = 7.3
Identities = 7/47 (14%), Positives = 20/47 (42%)
Query: 132 KISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHE 178
K++ E + F + ++E + R+ ++G+P + +
Sbjct: 39 KVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKD 85
>2hjr_A Malate dehydrogenase; malaria, structural genomics,
structural genomics consortium, SGC, oxidoreductase;
HET: CIT APR; 2.20A {Cryptosporidium parvum} (A:)
Length = 328
Score = 25.0 bits (53), Expect = 7.4
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
+ + L+D + + I+ + LK
Sbjct: 296 VVIVNLSDDEKSLFSKSVESIQNLVQDLKS 325
>2v7p_A L-lactate dehydrogenase; oxidoreductase, phosphorylation,
NAD, cytoplasm, glycolysis, thermophIle; HET: NAD; 2.10A
{Thermus thermophilus} PDB: 2e37_A* 2v6m_A* (A:)
Length = 310
Score = 24.9 bits (53), Expect = 7.5
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
L+ + E ++ +K L
Sbjct: 281 TVYPSLSPEEREALRRSAEILKEAAFALG 309
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog
complex, oxidoreductase; HET: A3D; 2.00A
{Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A*
2fm3_A (A:)
Length = 317
Score = 25.0 bits (53), Expect = 7.6
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
I + LT + + + + + + L
Sbjct: 286 ILELDLTPLEQKLLGESINEVNTISKVLDN 315
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove,
disordered Se-Met, structural genomics, putative
ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia
coli} (A:)
Length = 221
Score = 24.9 bits (54), Expect = 8.3
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 147 FFTHFKEYIDEVDKILMRYGIEGIPLTDFD 176
T + E+ +L +G++ + TD
Sbjct: 28 LATGNVGKVRELASLLSDFGLDIVAQTDLG 57
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus
tremula} (A:)
Length = 113
Score = 25.0 bits (54), Expect = 8.9
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 132 KISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIP 171
K+ + T K +DE+ + + +E +P
Sbjct: 42 KMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMP 81
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.327 0.143 0.450
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,739,008
Number of extensions: 80331
Number of successful extensions: 542
Number of sequences better than 10.0: 1
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 93
Length of query: 214
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 129
Effective length of database: 2,082,624
Effective search space: 268658496
Effective search space used: 268658496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)