RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781163|ref|YP_003065576.1| hypothetical protein
CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62]
(214 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 38.0 bits (88), Expect = 0.001
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 30/97 (30%)
Query: 71 WFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQ-- 128
W E F + K AI VL F V PN + I + D++EN G
Sbjct: 289 W---ESF-FVSVRK---AITVLFFIGVRCYEAYPNTSLPPSILE-----DSLENNEGVPS 336
Query: 129 YLEKI---SQKNVEKDFFNSKFFTHFKEYIDEVDKIL 162
+ I +Q+ V+ Y+++ + L
Sbjct: 337 PMLSISNLTQEQVQD-------------YVNKTNSHL 360
Score = 27.6 bits (61), Expect = 2.3
Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 50/138 (36%)
Query: 77 FSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKD-----IAQLFTLIDNIENGYGQYLE 131
V + L F +L P A D A+L G++L
Sbjct: 18 HVLLVPTASFFIASQLQEQF-NKILPEPTEGFAADDEPTTPAEL----------VGKFLG 66
Query: 132 KISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVR 191
+S VE ++ D+V + LT+F+
Sbjct: 67 YVSSL-VEPS--------KVGQF-DQVLNLC---------LTEFE--------------N 93
Query: 192 DCLKKDNIH-YAKELRND 208
L+ ++IH A +L +
Sbjct: 94 CYLEGNDIHALAAKLLQE 111
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 32.3 bits (72), Expect = 0.072
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161
+ D+ IE Y Q L + +++ VEK + ++ E +++
Sbjct: 35 HRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERV 93
>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S
WORT, depression, allergy, PR-10 protein, cytokinin,
plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum
perforatum}
Length = 165
Score = 32.1 bits (73), Expect = 0.094
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV---RDCLK 195
F + T+ DE+D EG L D I+ + +K+
Sbjct: 65 FVDGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRD----NIEKVVYEVKLEAVGGGSKG 120
Query: 196 KDNIHY 201
K + Y
Sbjct: 121 KITVTY 126
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 31.4 bits (70), Expect = 0.14
Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 8/105 (7%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRY 165
K++A IE Y + + K+++ + F + + +K+
Sbjct: 31 QISTKELADFVRERATIEEAYSRSMTKLAKSASNYSQLGT-FAPVWDVFKTSTEKL---- 85
Query: 166 GIEGIPLTDFDHEKIKSYLT---HIKIVRDCLKKDNIHYAKELRN 207
+ L E IK K++ + ++
Sbjct: 86 ANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQT 130
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
9257A, PSI-2, protein structure initiative; 2.00A
{Caulobacter crescentus CB15}
Length = 417
Score = 31.3 bits (70), Expect = 0.16
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 2/111 (1%)
Query: 68 FAYWFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYG 127
A + KI A + + + P+ E + L D ++
Sbjct: 254 KAVYDHPRNLDDARLKKIADAGGAICINSIYLTDTTPSPERKAALEALGRAPD-MKTATP 312
Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPL-TDFDH 177
+ ++ + K D + F Y+ + +L G +G+ + D+D
Sbjct: 313 EAVKAYADKRAAIDKAHPAARGDFDLYMKSMLHVLKVAGPKGVCVGADWDG 363
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related
protein, heteronuclear structure; NMR {Prunus avium}
SCOP: d.129.3.1 PDB: 1h2o_A
Length = 159
Score = 31.3 bits (71), Expect = 0.17
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV 190
F + + K ID +DK Y IEG L D ++ K+V
Sbjct: 58 FGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGD----TLEKISYETKLV 105
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein,
PR- 10 protein, pathogenesis-related protein, allergen;
HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A*
2k7h_A
Length = 158
Score = 31.0 bits (70), Expect = 0.20
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 11/61 (18%)
Query: 148 FTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV----RDCLKKDNIH 200
+ I+ +D+ + Y + G+ L D I+ K+V + K I
Sbjct: 64 SKYVLHKIEAIDEANLGYNYSIVGGVGLPD----TIEKISFETKLVEGANGGSIGKVTIK 119
Query: 201 Y 201
Sbjct: 120 I 120
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis,
dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A
{Thalictrum flavum} PDB: 2vne_A*
Length = 201
Score = 30.7 bits (69), Expect = 0.25
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV 190
F +F +KE VD ++ I + + Y+ I +V
Sbjct: 84 FVPGEFPHEYKEKFILVDNEHRLKKVQMIE-GGYLDLGVTYYMDTIHVV 131
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (67), Expect = 0.40
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 22/101 (21%)
Query: 75 EKFSYDV----SIKI--VLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQ 128
E+F Y + ++K V A+++ F F G I + D L+ I E+ Y +
Sbjct: 1420 EQFEYVLYPSKTLKTDGVRAVSITSFGF--GQKGGQAIVVHPDY--LYGAI--TEDRYNE 1473
Query: 129 YLEKIS--QKNVEKDFFN----SKFFTHFKE---YIDEVDK 160
Y+ K+S +K+ K F N +K F KE Y DE+++
Sbjct: 1474 YVAKVSAREKSAYKFFHNGMIYNKLFVS-KEHAPYTDELEE 1513
>2vjg_A Major allergen DAU C 1; major carrot allergen, pathogenesis-related
protein, plant defense; HET: P4C PG4 PGE; 2.70A {Daucus
carota} PDB: 2wql_A* 2bk0_A
Length = 154
Score = 29.9 bits (67), Expect = 0.42
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 11/67 (16%)
Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIVR----DCL 194
T D V+K + Y I+G D I+S TH+ +V +
Sbjct: 58 LPEGSPITTMTVRTDAVNKEALSYDSTVIDG----DILLGFIESIETHMVVVPTADGGSI 113
Query: 195 KKDNIHY 201
K +
Sbjct: 114 TKTTAIF 120
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 29.8 bits (66), Expect = 0.50
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161
++ D+ QL +IE GY + L S+K +EK +K + E ++I
Sbjct: 21 YKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERI 79
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 29.8 bits (66), Expect = 0.53
Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSK------FFTHFKEYIDEVD 159
I++ + + IE Y + L +S+K K + F ++E++
Sbjct: 27 IDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMN 86
Query: 160 KILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRN 207
++ + + + Y+ +K R D + +
Sbjct: 87 DYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIET 134
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel
beta-sheet, plant protein; 2.20A {Pachyrhizus erosus}
SCOP: d.129.3.1 PDB: 1txc_A*
Length = 157
Score = 29.5 bits (66), Expect = 0.54
Identities = 5/48 (10%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKI 189
+ + +D +D+ + Y + E ++ K+
Sbjct: 57 ANEGDKTSFVLQKVDAIDEANLGYDYSIVG-GTGLPESLEKLSFETKV 103
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in neurons
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 29.5 bits (65), Expect = 0.60
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 6/107 (5%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKIL 162
+ D+ IE Y Q L +++ +EK + + E DK+
Sbjct: 33 HRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAMMTEADKVS 92
Query: 163 MRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRNDW 209
+ L + D EK+K++ K KE + +
Sbjct: 93 ELHQEVKNSLLNEDLEKVKNW---QKDAYHKQIMGGFKETKEAEDGF 136
>3hah_A Human pacsin1 F-BAR; pacsin,syndapin,FAP52,F-BAR, coiled coil,
cytoplasm, endocytosis, phosphoprotein, polymorphism,
SH3 domain; 2.77A {Homo sapiens} PDB: 3hai_A
Length = 325
Score = 29.3 bits (65), Expect = 0.69
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161
+ D+ IE YGQ L +++ +EK + + E DK+
Sbjct: 36 HRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKV 94
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3lll_A 3hah_A 3hai_A
Length = 312
Score = 28.6 bits (63), Expect = 0.94
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161
+ D+ IE Y Q L + +++ VEK + ++ E +++
Sbjct: 42 HRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERV 100
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 28.7 bits (63), Expect = 0.97
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161
+ D+ IE Y Q L + +++ VEK + ++ E +++
Sbjct: 42 HRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERV 100
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related
proteins, multiple- ligand binding, plant protein; HET:
ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*
Length = 155
Score = 28.8 bits (64), Expect = 1.1
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV----RDCLKKD 197
F ++ +E I E D+ G++ I + + + Y T K+ L
Sbjct: 58 FLPEVSPSYQREEITEFDESSHEIGLQVIE-GGYLSQGLSYYKTTFKLSEIEEDKTLVNV 116
Query: 198 NIHY 201
I Y
Sbjct: 117 KISY 120
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.30A {Homo sapiens} SCOP:
a.238.1.4
Length = 301
Score = 28.6 bits (63), Expect = 1.1
Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 6/108 (5%)
Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSK------FFTHFKEYIDEVD 159
+++ + +E Y + L + +K + K F + + EV+
Sbjct: 20 LDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVN 79
Query: 160 KILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRN 207
+ + L+ ++ Y +K R ++ ++L N
Sbjct: 80 DFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLEN 127
>2qlv_C Nuclear protein SNF4; heterotrimer, ATP-binding, carbohydrate
metabolism, kinase, membrane, nucleotide-binding,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 315
Score = 28.0 bits (61), Expect = 1.6
Identities = 9/55 (16%), Positives = 18/55 (32%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRNDW 209
+ + +L++ I PL D + LT + + EL +
Sbjct: 44 VKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKL 98
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber dsm 13855}
Length = 314
Score = 27.6 bits (61), Expect = 2.1
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 161 ILMRYGIE---GIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
L G+E + L + ++K+ H+ D L++
Sbjct: 268 KLGAGGVEEVIEVDLDADEKAQLKTSAGHVHSNLDDLQR 306
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 27.4 bits (60), Expect = 2.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 108 MAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKD 141
+ KD LF + N++ Y Q L KI +N +
Sbjct: 58 LNKDFYLLFKELANLKRNYAQQLRKIIAENEDIT 91
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor
biosynthesis, transferase; 1.45A {Escherichia coli}
SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D
1nvi_D
Length = 81
Score = 27.2 bits (60), Expect = 2.7
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 89 INVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQYLEKISQKNV 138
I VL F+ V L+G E+A D + L ++ ++ + +
Sbjct: 2 IKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDGKL 51
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 27.3 bits (60), Expect = 2.8
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 145 SKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHI-----KIVRDCLKKDNI 199
SK H + RYG+ G D K++ V KK+ +
Sbjct: 49 SKALLHATHLYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKV 108
Query: 200 HY 201
Y
Sbjct: 109 TY 110
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal,
alternative splicing, hydrolase, phosphoprotein,
polymorphism, thiol protease; 2.40A {Homo sapiens}
Length = 323
Score = 27.2 bits (59), Expect = 3.2
Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 3/76 (3%)
Query: 118 LIDNIENGYGQYLEKISQKNVEKD---FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTD 174
L D I + Y +YL + + F+S F+ + + + +
Sbjct: 49 LNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKR 108
Query: 175 FDHEKIKSYLTHIKIV 190
+ + +
Sbjct: 109 VRTWTRHINIFNKDYI 124
>3i4l_A A-type ATP synthase catalytic subunit A; hydrolase; HET: ANP; 2.40A
{Pyrococcus horikoshii} PDB: 3i72_A 3i73_A* 3ikj_A
1vdz_A
Length = 588
Score = 26.9 bits (59), Expect = 3.4
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
Query: 112 IAQLFTLIDNIENGY---------GQYLEKISQKNVEKDFFNSKFF-------THFKEYI 155
+ T++ + N Y G LE+I++ V ++ KF + +
Sbjct: 517 PEKQVTMMRVLLNFYDKTMEAINRGVPLEEIAKLPVREEIGRMKFERDVSKIRSLIDKTN 576
Query: 156 DEVDKILMRYG 166
++ +++ +YG
Sbjct: 577 EQFEELFKKYG 587
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
single-stranded DNA, isomerase/DNA complex; HET: DNA;
2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Length = 659
Score = 26.8 bits (58), Expect = 3.8
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMR 164
L +IS+K F + ID+ + +R
Sbjct: 576 SVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVR 612
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix
protein, transcription; 2.20A {Staphylococcus aureus}
SCOP: a.4.5.28 a.4.5.28
Length = 250
Score = 26.8 bits (59), Expect = 3.9
Identities = 6/52 (11%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 150 HFKEYIDEVDKILMRYGIE---GIPLTDFDHEKIKSYLTHIKIVRDCLKKDN 198
E + D+I+ ++ + + D ++ + + + ++ +KK
Sbjct: 103 KIAERVTLFDQIIKQFNLADQSESQMIPKDSKEFLNLMMYTMYFKNIIKKHL 154
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila
melanogaster} SCOP: b.34.14.1
Length = 143
Score = 26.8 bits (59), Expect = 4.2
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV 190
I+ +++ ++ I D+ ++ +L I +V
Sbjct: 8 IEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVV 43
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 26.5 bits (58), Expect = 5.1
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
I +PL + + + + ++ D LK
Sbjct: 279 ILELPLNEEEMALLNASAKAVRATLDTLKS 308
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 26.2 bits (58), Expect = 5.1
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 116 FTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDF 175
L E G + + + + F FF F + + E + GI + +F
Sbjct: 35 VDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGG-----PLNGIEIKEF 89
Query: 176 ---DHEKIKSYLTHIK 188
D K+ Y K
Sbjct: 90 SRCDFTKMFDYFQLQK 105
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide
complex, nucleotide binding fold, structural genomics,
PSI; HET: TYD; 1.70A
{Methanothermobacterthermautotrophicus} SCOP: c.68.1.6
Length = 295
Score = 26.4 bits (58), Expect = 5.6
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 111 DIAQLFTLIDNIE-NGYGQYLEKISQKN 137
+ + + +E YG+YL +++ N
Sbjct: 265 TREDVLEMAEKLEKTDYGKYLRDLAEGN 292
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 26.3 bits (57), Expect = 5.8
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 143 FNSKFFTHFKEYIDEVDKILMRYGIEGIPLT 173
F SK+ +F D I RY + P
Sbjct: 73 FVSKYNLNFTNLNDADGVIWARYNVPWQPAF 103
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3ikj_A 1vdz_A
Length = 588
Score = 26.2 bits (57), Expect = 5.9
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
Query: 112 IAQLFTLIDNIENGY---------GQYLEKISQKNVEKDFFNSKFF-------THFKEYI 155
+ T++ + N Y G LE+I++ V ++ KF + +
Sbjct: 517 PEKQVTMMRVLLNFYDKTMEAINRGVPLEEIAKLPVREEIGRMKFERDVSKIRSLIDKTN 576
Query: 156 DEVDKILMRYG 166
++ +++ +YG
Sbjct: 577 EQFEELFKKYG 587
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 26.0 bits (57), Expect = 6.4
Identities = 5/40 (12%), Positives = 14/40 (35%)
Query: 132 KISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIP 171
+ + + + K + V ++ +Y I +P
Sbjct: 48 AQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVP 87
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 1llc_A*
Length = 326
Score = 25.9 bits (56), Expect = 7.2
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 161 ILMRYGIE---GIPLTDFDHEKIKSYLTHIK-IVRDCLKKDNI 199
++ R GI+ IPLTD + E ++ + +K ++ D K++I
Sbjct: 280 VINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDAFAKNDI 322
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA;
1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X*
1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A*
1ecl_A 1cy9_A* 1cyy_A*
Length = 592
Score = 25.9 bits (56), Expect = 7.8
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDK 160
L++++ E FF+ F + +D+ +K
Sbjct: 548 NNLDQVANHEAEWKAVLDHFFSDFTQQLDKAEK 580
>1b8p_A Protein (malate dehydrogenase); 1.90A {Aquaspirillum arcticum}
SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 25.6 bits (55), Expect = 7.9
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
++G+ + F E+I L + ++ ++
Sbjct: 297 VQGLSIDAFSQERINVTLNELLEEQNGVQH 326
>3ktb_A Arsenical resistance operon trans-acting repressor;
alpha-beta-alpha sandwich, helix-turn-helix, structural
genomics, PSI-2; 2.10A {Bacteroides vulgatus atcc 8482}
Length = 106
Score = 25.9 bits (57), Expect = 8.1
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 130 LEKISQKNVEKDFFNSKFFTH----FKEYIDEVDKILMRYGIEGIPLTDFDHEKIKS--Y 183
+E + ++ + N + V+ L ++G + +P+T D E S Y
Sbjct: 36 IESLKKQGIIVTRHN---LRDEPQVYVSN-KTVNDFLQKHGADALPITLVDGEIAVSQTY 91
Query: 184 LT 185
T
Sbjct: 92 PT 93
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein complex, cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 25.7 bits (56), Expect = 8.9
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 117 TLIDNIENGYGQYLEK---ISQKNVEKDFFNSKFFTHFKEYIDEVDKILMR 164
++IDN++ G IS+ F + +E + EV L
Sbjct: 76 SVIDNVKATSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDY 126
>3h9m_A P-aminobenzoate synthetase, component I; para-aminobenzoate
synthetase, cytophaga hutchinsonii,YP_678417.1,
CHU_1808; HET: PGE; 1.57A {Cytophaga hutchinsonii atcc
33406}
Length = 436
Score = 25.5 bits (55), Expect = 9.0
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 3/94 (3%)
Query: 71 WFFGEKFSYDV--SIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQ 128
W F SYD S++ + +F A P + + + +
Sbjct: 81 WIFV-FASYDGKNSVEQLHTSKEAGIAFAAATFFIPEHVWEIQPDGILIHKGSGSSLVTE 139
Query: 129 YLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKIL 162
V++ K + Y + D++
Sbjct: 140 IQHAEPSTPVQQSDIFVKQVVSKESYFNAFDELQ 173
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 25.4 bits (55), Expect = 9.7
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
+ I L + + IK + +K
Sbjct: 283 VVSIELDKDEIIAFRKSAEIIKKYCEEVKN 312
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.327 0.143 0.450
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,006,003
Number of extensions: 94896
Number of successful extensions: 621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 95
Length of query: 214
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 126
Effective length of database: 3,559,758
Effective search space: 448529508
Effective search space used: 448529508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)