BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62] (214 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62] Length = 214 Score = 437 bits (1123), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/214 (100%), Positives = 214/214 (100%) Query: 1 MQDIEDSIPKITSSTGKCLKFIMRAFGLFDSAEQRKLWSLLRYWSVEFWELLCRTFLWLL 60 MQDIEDSIPKITSSTGKCLKFIMRAFGLFDSAEQRKLWSLLRYWSVEFWELLCRTFLWLL Sbjct: 1 MQDIEDSIPKITSSTGKCLKFIMRAFGLFDSAEQRKLWSLLRYWSVEFWELLCRTFLWLL 60 Query: 61 CLGFFTLFAYWFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLID 120 CLGFFTLFAYWFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLID Sbjct: 61 CLGFFTLFAYWFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLID 120 Query: 121 NIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKI 180 NIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKI Sbjct: 121 NIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKI 180 Query: 181 KSYLTHIKIVRDCLKKDNIHYAKELRNDWIGSNR 214 KSYLTHIKIVRDCLKKDNIHYAKELRNDWIGSNR Sbjct: 181 KSYLTHIKIVRDCLKKDNIHYAKELRNDWIGSNR 214 >gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62] Length = 266 Score = 39.7 bits (91), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/270 (20%), Positives = 100/270 (37%), Gaps = 73/270 (27%) Query: 6 DSIPKITSSTGKCLKFIMRAFGLFDSAE----QRKLWSLLRYWSVEFWELLCRTFLWLLC 61 + I +T K F+ F + E R++W LLR +F RTF C Sbjct: 3 ERIANTIVATSKKWSFL---FAILSPTEVYNVHRRIWHLLR---DDFGYFTKRTFF---C 53 Query: 62 LGFFTLFAYWFFG-----------EKFSYDVSIK-----------IVLAINVLLFSFVIA 99 FF Y FF + Y +S + I + +L S ++ Sbjct: 54 FAFFITIIYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCILV 113 Query: 100 LLGNPNIEMAKDIAQLFTLIDNIENGYGQYLE--KISQKNVEKDFFNSK-----FFTHFK 152 + + M +D ++ +I +I + QY E + + ++++ N F + + Sbjct: 114 ATDDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDRE 173 Query: 153 EYI-----------------------------DEVDKILMRYGIEGIP--LTDFDHEKIK 181 EYI DE++ IL RY IE IP L + ++ Sbjct: 174 EYIGLHQKQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEAI 233 Query: 182 SYLTHIKIVRDCLKKDNIHYAKELRNDWIG 211 Y+ H+ ++ + + I ++ R ++IG Sbjct: 234 KYINHVYLLGKWISRGEIQRSQIARREYIG 263 >gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 26.2 bits (56), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Query: 140 KDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCL-KKDN 198 +D +N+ KE IDE+ +I Y I LT I + + I R + +K+ Sbjct: 12 QDLYNANLIK--KEQIDEIKEISNHYSIA---LTPVIANLINPHNPNDPIARQFIPQKEE 66 Query: 199 IHYAKELRNDWIGSN 213 ++ E R D IG N Sbjct: 67 LNILPEEREDPIGDN 81 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 25.0 bits (53), Expect = 0.98, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Query: 108 MAKDIAQLFTLIDNI---ENGY-GQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKI 161 +A+ I FT+ D E GY G+ +E I K ++ +N + YIDEVDKI Sbjct: 133 LARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKI 190 >gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus str. psy62] Length = 523 Score = 24.6 bits (52), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 9/82 (10%) Query: 3 DIEDSIPKITSSTGKCLKFIMRAFGLFDSAEQRKLWS--LLRYWSVEFWELLCRTFLWLL 60 D+ S+ + ++ G F + A + SA S ++RY S T + +L Sbjct: 140 DLVFSLDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMIRYIS-------RHTTVVIL 192 Query: 61 CLGFFTLFAYWFFGEKFSYDVS 82 CLGF + + E +D+ Sbjct: 193 CLGFLLMIGFLLIIEGLHFDIP 214 >gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 517 Score = 24.6 bits (52), Expect = 1.3, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 18/36 (50%) Query: 109 AKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFN 144 A IAQ+ + + NGY + KI + V K FF Sbjct: 129 AASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFR 164 >gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 337 Score = 23.9 bits (50), Expect = 2.1, Method: Compositional matrix adjust. Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 8/47 (17%) Query: 4 IEDSIPKITSSTGKCLKFIMRAFGLFDSAEQRKLWSLLRYWSVEFWE 50 I +P+ SSTG+C+ F+ + F Q +WS + E E Sbjct: 207 INTGMPE--SSTGECVSFVEQHF------SQSSIWSEFNAVTNEMME 245 >gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 23.9 bits (50), Expect = 2.6, Method: Compositional matrix adjust. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Query: 131 EKISQKNVEKDF-----FNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLT 185 E+++Q + K F N + + D + ++ +Y I GIP+ + D K+ LT Sbjct: 83 EQVAQVHQVKKFESGMVVNPVTISPYATLADAL-ALMKKYSISGIPVVESDVGKLVGILT 141 Query: 186 H 186 + Sbjct: 142 N 142 >gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 426 Score = 22.7 bits (47), Expect = 4.6, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Query: 107 EMAKDIAQLFTLIDNIENGYGQYLEK 132 E KDI ++ ++++E+G G+YL K Sbjct: 43 ESGKDI--IYIGLEDVESGTGKYLPK 66 >gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] Length = 675 Score = 22.7 bits (47), Expect = 4.8, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNI 199 I GI L D +KS L+H I + L KD I Sbjct: 248 ITGIDLVDMSEGTLKSILSHSNITQ--LAKDLI 278 >gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62] Length = 192 Score = 22.7 bits (47), Expect = 5.4, Method: Compositional matrix adjust. Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Query: 75 EKFSY-DVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGY-GQYLEK 132 E+ S+ V I ++ N+LL FV GN + ++++Q + I ++EN G Y + Sbjct: 34 EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLE 93 Query: 133 ISQKNVEKDFFNSKFFTHFKEYI 155 +S +++ F + ++ Sbjct: 94 VSSPGIDRPMVRKSDFLRWNGHV 116 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 21.9 bits (45), Expect = 7.8, Method: Compositional matrix adjust. Identities = 8/16 (50%), Positives = 12/16 (75%) Query: 191 RDCLKKDNIHYAKELR 206 RD LK+D++ AKE + Sbjct: 1608 RDILKRDSVSLAKEAK 1623 >gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62] Length = 307 Score = 21.9 bits (45), Expect = 8.8, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 148 FTHFKEYIDEVDKILMRYGIEGIPLTDFDH-------EKIKSYLTHIKIVRDCLKK 196 +TH+KE+ D + R GI FDH I + + I V DC K Sbjct: 188 YTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIK 243 >gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease [Candidatus Liberibacter asiaticus str. psy62] Length = 363 Score = 21.9 bits (45), Expect = 9.0, Method: Compositional matrix adjust. Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Query: 92 LLFSFVIALL--GNPNIEMAKDIAQLFTLIDNIENGYGQYLEKISQ 135 + F +++ L+ G+ I + +D+A L I++ G+ +KI++ Sbjct: 133 IAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAK 178 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.327 0.143 0.450 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 151,405 Number of Sequences: 1233 Number of extensions: 6681 Number of successful extensions: 40 Number of sequences better than 100.0: 20 Number of HSP's better than 100.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 21 length of query: 214 length of database: 328,796 effective HSP length: 70 effective length of query: 144 effective length of database: 242,486 effective search space: 34917984 effective search space used: 34917984 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 36 (18.5 bits)