BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781163|ref|YP_003065576.1| hypothetical protein
CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62]
         (214 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 214

 Score =  437 bits (1123), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/214 (100%), Positives = 214/214 (100%)

Query: 1   MQDIEDSIPKITSSTGKCLKFIMRAFGLFDSAEQRKLWSLLRYWSVEFWELLCRTFLWLL 60
           MQDIEDSIPKITSSTGKCLKFIMRAFGLFDSAEQRKLWSLLRYWSVEFWELLCRTFLWLL
Sbjct: 1   MQDIEDSIPKITSSTGKCLKFIMRAFGLFDSAEQRKLWSLLRYWSVEFWELLCRTFLWLL 60

Query: 61  CLGFFTLFAYWFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLID 120
           CLGFFTLFAYWFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLID
Sbjct: 61  CLGFFTLFAYWFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLID 120

Query: 121 NIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKI 180
           NIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKI
Sbjct: 121 NIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKI 180

Query: 181 KSYLTHIKIVRDCLKKDNIHYAKELRNDWIGSNR 214
           KSYLTHIKIVRDCLKKDNIHYAKELRNDWIGSNR
Sbjct: 181 KSYLTHIKIVRDCLKKDNIHYAKELRNDWIGSNR 214


>gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 266

 Score = 39.7 bits (91), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 100/270 (37%), Gaps = 73/270 (27%)

Query: 6   DSIPKITSSTGKCLKFIMRAFGLFDSAE----QRKLWSLLRYWSVEFWELLCRTFLWLLC 61
           + I     +T K   F+   F +    E     R++W LLR    +F     RTF    C
Sbjct: 3   ERIANTIVATSKKWSFL---FAILSPTEVYNVHRRIWHLLR---DDFGYFTKRTFF---C 53

Query: 62  LGFFTLFAYWFFG-----------EKFSYDVSIK-----------IVLAINVLLFSFVIA 99
             FF    Y FF            +   Y +S +           I   + +L  S ++ 
Sbjct: 54  FAFFITIIYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCILV 113

Query: 100 LLGNPNIEMAKDIAQLFTLIDNIENGYGQYLE--KISQKNVEKDFFNSK-----FFTHFK 152
              +  + M +D  ++  +I +I   + QY E  + +  ++++   N       F +  +
Sbjct: 114 ATDDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDRE 173

Query: 153 EYI-----------------------------DEVDKILMRYGIEGIP--LTDFDHEKIK 181
           EYI                             DE++ IL RY IE IP  L +   ++  
Sbjct: 174 EYIGLHQKQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEAI 233

Query: 182 SYLTHIKIVRDCLKKDNIHYAKELRNDWIG 211
            Y+ H+ ++   + +  I  ++  R ++IG
Sbjct: 234 KYINHVYLLGKWISRGEIQRSQIARREYIG 263


>gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 352

 Score = 26.2 bits (56), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 140 KDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCL-KKDN 198
           +D +N+      KE IDE+ +I   Y I    LT      I  +  +  I R  + +K+ 
Sbjct: 12  QDLYNANLIK--KEQIDEIKEISNHYSIA---LTPVIANLINPHNPNDPIARQFIPQKEE 66

Query: 199 IHYAKELRNDWIGSN 213
           ++   E R D IG N
Sbjct: 67  LNILPEEREDPIGDN 81


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 25.0 bits (53), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 108 MAKDIAQLFTLIDNI---ENGY-GQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKI 161
           +A+ I   FT+ D     E GY G+ +E I  K ++   +N +       YIDEVDKI
Sbjct: 133 LARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKI 190


>gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 523

 Score = 24.6 bits (52), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 3   DIEDSIPKITSSTGKCLKFIMRAFGLFDSAEQRKLWS--LLRYWSVEFWELLCRTFLWLL 60
           D+  S+  + ++ G    F + A  +  SA      S  ++RY S         T + +L
Sbjct: 140 DLVFSLDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMIRYIS-------RHTTVVIL 192

Query: 61  CLGFFTLFAYWFFGEKFSYDVS 82
           CLGF  +  +    E   +D+ 
Sbjct: 193 CLGFLLMIGFLLIIEGLHFDIP 214


>gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 517

 Score = 24.6 bits (52), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 109 AKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFN 144
           A  IAQ+   + +  NGY +   KI +  V K FF 
Sbjct: 129 AASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFR 164


>gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 337

 Score = 23.9 bits (50), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 8/47 (17%)

Query: 4   IEDSIPKITSSTGKCLKFIMRAFGLFDSAEQRKLWSLLRYWSVEFWE 50
           I   +P+  SSTG+C+ F+ + F       Q  +WS     + E  E
Sbjct: 207 INTGMPE--SSTGECVSFVEQHF------SQSSIWSEFNAVTNEMME 245


>gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score = 23.9 bits (50), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 131 EKISQKNVEKDF-----FNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLT 185
           E+++Q +  K F      N    + +    D +  ++ +Y I GIP+ + D  K+   LT
Sbjct: 83  EQVAQVHQVKKFESGMVVNPVTISPYATLADAL-ALMKKYSISGIPVVESDVGKLVGILT 141

Query: 186 H 186
           +
Sbjct: 142 N 142


>gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 426

 Score = 22.7 bits (47), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)

Query: 107 EMAKDIAQLFTLIDNIENGYGQYLEK 132
           E  KDI  ++  ++++E+G G+YL K
Sbjct: 43  ESGKDI--IYIGLEDVESGTGKYLPK 66


>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 675

 Score = 22.7 bits (47), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNI 199
           I GI L D     +KS L+H  I +  L KD I
Sbjct: 248 ITGIDLVDMSEGTLKSILSHSNITQ--LAKDLI 278


>gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 192

 Score = 22.7 bits (47), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 75  EKFSY-DVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGY-GQYLEK 132
           E+ S+  V I ++   N+LL  FV    GN  +   ++++Q  + I ++EN   G Y  +
Sbjct: 34  EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLE 93

Query: 133 ISQKNVEKDFFNSKFFTHFKEYI 155
           +S   +++       F  +  ++
Sbjct: 94  VSSPGIDRPMVRKSDFLRWNGHV 116


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1828

 Score = 21.9 bits (45), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 191  RDCLKKDNIHYAKELR 206
            RD LK+D++  AKE +
Sbjct: 1608 RDILKRDSVSLAKEAK 1623


>gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 307

 Score = 21.9 bits (45), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 148 FTHFKEYIDEVDKILMRYGIEGIPLTDFDH-------EKIKSYLTHIKIVRDCLKK 196
           +TH+KE+ D    +  R    GI    FDH         I +  + I  V DC  K
Sbjct: 188 YTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIK 243


>gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 363

 Score = 21.9 bits (45), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 92  LLFSFVIALL--GNPNIEMAKDIAQLFTLIDNIENGYGQYLEKISQ 135
           + F +++ L+  G+  I + +D+A    L   I++  G+  +KI++
Sbjct: 133 IAFPYLVLLVSGGHTQILLVRDVAHYDRLGTTIDDALGECFDKIAK 178


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.327    0.143    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,405
Number of Sequences: 1233
Number of extensions: 6681
Number of successful extensions: 40
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 21
length of query: 214
length of database: 328,796
effective HSP length: 70
effective length of query: 144
effective length of database: 242,486
effective search space: 34917984
effective search space used: 34917984
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 36 (18.5 bits)