Query         gi|254781164|ref|YP_003065577.1| hypothetical protein CLIBASIA_05355 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 56
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 22:24:08 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781164.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3ixz_A Potassium-transporting  31.3      28 0.00083   17.4   2.0   30   15-44     31-60  (140)
  2 >1msw_D DNA-directed RNA polym  30.1      21 0.00064   18.0   1.2   21   18-38      6-26  (98)
  3 >2dzd_A Pyruvate carboxylase;   19.5      20 0.00058   18.2  -0.7   16    6-26     84-99  (110)
  4 >3glk_A Acetyl-COA carboxylase  17.5      23 0.00068   17.8  -0.7   16    6-26    128-143 (159)
  5 >3hbl_A Pyruvate carboxylase;   15.8      22 0.00064   18.0  -1.2    6    8-13     84-89  (107)
  6 >1am7_A Lysozyme; glycosidase,  12.2 1.2E+02  0.0035   14.1   1.8   19   18-36     23-41  (100)
  7 >3c2g_A SYS-1 protein; beta-ca  10.3 1.2E+02  0.0036   14.1   1.3   10   32-41     54-63  (200)
  8 >2ytv_A Cold shock domain-cont   9.7      56  0.0017   15.8  -0.6   24    5-28     16-39  (79)
  9 >1yvu_A Hypothetical protein A   8.1   1E+02   0.003   14.5   0.2   11   39-49     86-96  (102)
 10 >2v6e_A Protelemorase; hairpin   6.9 2.1E+02  0.0063   12.8   1.6   16   33-48     10-25  (125)

No 1  
>>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:344-380,A:764-866)
Probab=31.32  E-value=28  Score=17.36  Aligned_cols=30  Identities=27%  Similarity=0.568  Sum_probs=26.0

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             604676346667533799999986541640
Q gi|254781164|r   15 RESDGRADFSDISEGIALLNIIYNTMKKPV   44 (56)
Q Consensus        15 resdgradfsdisegiallniiyntmkkpv   44 (56)
                      -|.=|.+||+.|-+.|..=.-+|+.+||-+
T Consensus        31 vetlG~vnFssIv~aI~eGR~i~~Nikk~i   60 (140)
T 3ixz_A           31 VETLGSTNFASIVTGVEQGRLIFDNLKKSI   60 (140)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             988615888899999999999999999999


No 2  
>>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} (D:1-66,D:248-279)
Probab=30.08  E-value=21  Score=17.98  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=15.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q ss_conf             676346667533799999986
Q gi|254781164|r   18 DGRADFSDISEGIALLNIIYN   38 (56)
Q Consensus        18 dgradfsdisegiallniiyn   38 (56)
                      -.+.|||||+-.+--.|+.-+
T Consensus         6 ~~k~dFSdi~~a~~pfn~Lad   26 (98)
T 1msw_D            6 IAKNDFSDIELAAIPFNTLAD   26 (98)
T ss_dssp             CCCCCCGGGSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHHCCCCHHHHH
T ss_conf             132402566663178035666


No 3  
>>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} (A:1-110)
Probab=19.51  E-value=20  Score=18.19  Aligned_cols=16  Identities=44%  Similarity=0.742  Sum_probs=9.1

Q ss_pred             EEEEEEEEEEECCCCCCHHHH
Q ss_conf             720024577604676346667
Q gi|254781164|r    6 LEGYGFLSLRESDGRADFSDI   26 (56)
Q Consensus         6 legygflslresdgradfsdi   26 (56)
                      .-||||||-     .++|...
T Consensus        84 hPGyGflSE-----n~~fa~~   99 (110)
T 2dzd_A           84 HPGYGFLSE-----NIQFAKR   99 (110)
T ss_dssp             ECCSSSSTT-----CHHHHHH
T ss_pred             EECHHHHHH-----CHHHHHH
T ss_conf             708767544-----7776663


No 4  
>>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A (A:1-159)
Probab=17.54  E-value=23  Score=17.82  Aligned_cols=16  Identities=19%  Similarity=0.495  Sum_probs=9.3

Q ss_pred             EEEEEEEEEEECCCCCCHHHH
Q ss_conf             720024577604676346667
Q gi|254781164|r    6 LEGYGFLSLRESDGRADFSDI   26 (56)
Q Consensus         6 legygflslresdgradfsdi   26 (56)
                      .-||||||-     .++|.+.
T Consensus       128 hPGyGFLSE-----n~~Fa~~  143 (159)
T 3glk_A          128 WAGWGHASE-----NPKLPEL  143 (159)
T ss_dssp             ECCSSGGGG-----CTHHHHH
T ss_pred             ECCCCCCCC-----CHHHHHH
T ss_conf             708645364-----9999999


No 5  
>>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* (A:1-107)
Probab=15.85  E-value=22  Score=17.96  Aligned_cols=6  Identities=100%  Similarity=1.896  Sum_probs=0.0

Q ss_pred             EEEEEE
Q ss_conf             002457
Q gi|254781164|r    8 GYGFLS   13 (56)
Q Consensus         8 gygfls   13 (56)
                      ||||||
T Consensus        84 GyGflS   89 (107)
T 3hbl_A           84 GYGFLS   89 (107)
T ss_dssp             TTTTST
T ss_pred             CCCCCC
T ss_conf             844032


No 6  
>>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Bacteriophage lambda} (A:1-26,A:85-158)
Probab=12.20  E-value=1.2e+02  Score=14.14  Aligned_cols=19  Identities=42%  Similarity=0.585  Sum_probs=0.0

Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q ss_conf             6763466675337999999
Q gi|254781164|r   18 DGRADFSDISEGIALLNII   36 (56)
Q Consensus        18 dgradfsdisegiallnii   36 (56)
                      .||.|||-.|.-.+-+-+|
T Consensus        23 ~~~~DFsP~sQD~~Al~LI   41 (100)
T 1am7_A           23 NGRQDFSPKSQDAVALQQI   41 (100)
T ss_dssp             SSSSCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHH
T ss_conf             5566998688999999999


No 7  
>>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* (A:1-200)
Probab=10.28  E-value=1.2e+02  Score=14.06  Aligned_cols=10  Identities=60%  Similarity=1.115  Sum_probs=0.0

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999986541
Q gi|254781164|r   32 LLNIIYNTMK   41 (56)
Q Consensus        32 llniiyntmk   41 (56)
                      +|||||..||
T Consensus        54 ~l~ii~dg~k   63 (200)
T 3c2g_A           54 ILNIIYDGLK   63 (200)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHCCCC
T ss_conf             9999863788


No 8  
>>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding; NMR {Homo sapiens} (A:)
Probab=9.68  E-value=56  Score=15.80  Aligned_cols=24  Identities=21%  Similarity=0.498  Sum_probs=0.0

Q ss_pred             EEEEEEEEEEEECCCCCCHHHHHH
Q ss_conf             872002457760467634666753
Q gi|254781164|r    5 FLEGYGFLSLRESDGRADFSDISE   28 (56)
Q Consensus         5 flegygflslresdgradfsdise   28 (56)
                      |-.||||++.-...|.--|-.+|+
T Consensus        16 fdkGfGFI~~~d~~g~dvF~H~s~   39 (79)
T 2ytv_A           16 VKDQFGFINYEVGDSKKLFFHVKE   39 (79)
T ss_dssp             CCSSEEEESCCCSSSSSEEEETTT
T ss_pred             ECCCCEEEEECCCCCCEEEEEHHH
T ss_conf             338820888148998378889567


No 9  
>>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus VF5} (A:168-269)
Probab=8.09  E-value=1e+02  Score=14.49  Aligned_cols=11  Identities=64%  Similarity=1.062  Sum_probs=0.0

Q ss_pred             HHHCCCEECCC
Q ss_conf             54164000246
Q gi|254781164|r   39 TMKKPVLSFEN   49 (56)
Q Consensus        39 tmkkpvlsfen   49 (56)
                      |.-||||.+||
T Consensus        86 tilkpvltyen   96 (102)
T 1yvu_A           86 TILKPVLTYEN   96 (102)
T ss_dssp             GGEEECCCCC-
T ss_pred             HHHCHHHCCCC
T ss_conf             54011200469


No 10 
>>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2} (A:250-297,A:383-459)
Probab=6.93  E-value=2.1e+02  Score=12.79  Aligned_cols=16  Identities=38%  Similarity=0.978  Sum_probs=0.0

Q ss_pred             HHHHHHHHHCCCEECC
Q ss_conf             9999865416400024
Q gi|254781164|r   33 LNIIYNTMKKPVLSFE   48 (56)
Q Consensus        33 lniiyntmkkpvlsfe   48 (56)
                      ...||....||+.||.
T Consensus        10 ~~~~~~~~~~~~~~~~   25 (125)
T 2v6e_A           10 MQAIYDIINKPIVSFD   25 (125)
T ss_dssp             HHHHHHHHHSCGGGSC
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999961222320


Done!