Query gi|254781164|ref|YP_003065577.1| hypothetical protein CLIBASIA_05355 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 56 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:34:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781164.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1w96a2 c.30.1.1 (A:14-183) Ac 19.8 6.8 0.0005 18.5 -1.0 17 6-27 134-150 (170) 2 d1ulza2 c.30.1.1 (A:1-114) Bio 19.3 7.1 0.00052 18.4 -1.0 17 6-27 78-94 (114) 3 d1hx8a1 a.7.8.2 (A:167-299) AP 11.8 51 0.0037 14.0 1.8 23 21-43 54-76 (133) 4 d1hf8a1 a.7.8.2 (A:150-281) Cl 7.2 60 0.0044 13.6 0.7 23 21-43 57-79 (132) 5 d1mjca_ b.40.4.5 (A:) Major co 6.7 69 0.005 13.3 0.8 20 7-27 15-34 (69) 6 d3ctaa1 a.4.5.28 (A:5-89) Ta10 5.4 52 0.0038 13.9 -0.4 35 7-42 46-81 (85) 7 d1a62a2 b.40.4.5 (A:48-125) Rh 5.4 68 0.0049 13.3 0.1 10 5-14 11-20 (78) 8 d1c9oa_ b.40.4.5 (A:) Major co 4.5 92 0.0067 12.7 0.3 19 7-27 13-31 (66) 9 d1cv8a_ d.3.1.1 (A:) Staphopai 4.2 1.3E+02 0.0095 11.9 1.6 33 9-41 8-40 (173) 10 d1wfqa_ b.40.4.5 (A:) Cold sho 4.1 1.3E+02 0.0098 11.8 0.9 9 5-13 26-34 (89) No 1 >d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=19.85 E-value=6.8 Score=18.54 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=9.8 Q ss_pred EEEEEEEEEEECCCCCCHHHHH Q ss_conf 7200245776046763466675 Q gi|254781164|r 6 LEGYGFLSLRESDGRADFSDIS 27 (56) Q Consensus 6 legygflslresdgradfsdis 27 (56) --||||||- .++|...- T Consensus 134 HPGYGFLSE-----n~~FA~~~ 150 (170) T d1w96a2 134 WAGWGHASE-----NPLLPEKL 150 (170) T ss_dssp ECCSSTTTT-----CTHHHHHH T ss_pred EECHHHHHH-----CHHHHHHH T ss_conf 846055301-----77899999 No 2 >d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Probab=19.32 E-value=7.1 Score=18.44 Aligned_cols=17 Identities=41% Similarity=0.911 Sum_probs=10.5 Q ss_pred EEEEEEEEEEECCCCCCHHHHH Q ss_conf 7200245776046763466675 Q gi|254781164|r 6 LEGYGFLSLRESDGRADFSDIS 27 (56) Q Consensus 6 legygflslresdgradfsdis 27 (56) --|||||| ..++|...- T Consensus 78 hPGyGFLS-----Ena~Fa~~~ 94 (114) T d1ulza2 78 HPGYGFLA-----ENAEFAKMC 94 (114) T ss_dssp ECCSSTTT-----TCHHHHHHH T ss_pred ECCHHHHH-----HHHHHHHHH T ss_conf 63346550-----589999999 No 3 >d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=11.80 E-value=51 Score=14.01 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=17.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 34666753379999998654164 Q gi|254781164|r 21 ADFSDISEGIALLNIIYNTMKKP 43 (56) Q Consensus 21 adfsdisegiallniiyntmkkp 43 (56) .=|.+|++||+.+---|-.|.|+ T Consensus 54 ~lY~~inegiinLLd~fFem~k~ 76 (133) T d1hx8a1 54 RLFACYNDGIINLLEKYFDMNKK 76 (133) T ss_dssp HHHHHHHHHHHHHHHHHTTCCSH T ss_pred HHHHHHHHHHHHHHHHHHCCCHH T ss_conf 99999999999999998706899 No 4 >d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=7.23 E-value=60 Score=13.63 Aligned_cols=23 Identities=39% Similarity=0.356 Sum_probs=15.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 34666753379999998654164 Q gi|254781164|r 21 ADFSDISEGIALLNIIYNTMKKP 43 (56) Q Consensus 21 adfsdisegiallniiyntmkkp 43 (56) .=|.+|++||+.|---|-.|.|+ T Consensus 57 ~lY~~inegiinLLd~fFem~k~ 79 (132) T d1hf8a1 57 RLFAAYNEGIINLLEKYFDMKKN 79 (132) T ss_dssp HHHHHHHHHHHHHHHHSSSSCHH T ss_pred HHHHHHHHHHHHHHHHHHHCCHH T ss_conf 99999989999999999846899 No 5 >d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli [TaxId: 562]} Probab=6.72 E-value=69 Score=13.31 Aligned_cols=20 Identities=25% Similarity=0.712 Sum_probs=11.2 Q ss_pred EEEEEEEEEECCCCCCHHHHH Q ss_conf 200245776046763466675 Q gi|254781164|r 7 EGYGFLSLRESDGRADFSDIS 27 (56) Q Consensus 7 egygflslresdgradfsdis 27 (56) .||||+. .+..++--|-.+| T Consensus 15 kGfGFI~-~d~g~~diFvH~s 34 (69) T d1mjca_ 15 KGFGFIT-PDDGSKDVFVHFS 34 (69) T ss_dssp TTEEEEE-ETTSCCCEEEEGG T ss_pred CCEEEEE-ECCCCCCEEEEHH T ss_conf 9979999-7689832999958 No 6 >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} Probab=5.43 E-value=52 Score=13.95 Aligned_cols=35 Identities=20% Similarity=0.516 Sum_probs=22.9 Q ss_pred EEEEEEEEEECCCCCCHHHHH-HHHHHHHHHHHHHHC Q ss_conf 200245776046763466675-337999999865416 Q gi|254781164|r 7 EGYGFLSLRESDGRADFSDIS-EGIALLNIIYNTMKK 42 (56) Q Consensus 7 egygflslresdgradfsdis-egiallniiyntmkk 42 (56) |--|+.. |+.|||+-+-.++ +|..++.-.|..+.+ T Consensus 46 e~~GlV~-r~~D~R~~~i~LT~~G~~~l~~~~~~~~r 81 (85) T d3ctaa1 46 EKNGYIT-RTVTKRGQILNITEKGLDVLYTEFADLSR 81 (85) T ss_dssp HHTTSEE-EEEETTEEEEEECHHHHHHHHHHHHHHHH T ss_pred HHCCCEE-EECCCCCCCCEECHHHHHHHHHHHHHHHH T ss_conf 9879804-31245543000789999999999999999 No 7 >d1a62a2 b.40.4.5 (A:48-125) Rho termination factor, RNA-binding domain {Escherichia coli [TaxId: 562]} Probab=5.35 E-value=68 Score=13.35 Aligned_cols=10 Identities=40% Similarity=1.002 Sum_probs=6.8 Q ss_pred EEEEEEEEEE Q ss_conf 8720024577 Q gi|254781164|r 5 FLEGYGFLSL 14 (56) Q Consensus 5 flegygflsl 14 (56) .-+|||||-- T Consensus 11 ~~dGyGFLR~ 20 (78) T d1a62a2 11 LQDGFGFLRS 20 (78) T ss_dssp CTTSCEEEEC T ss_pred CCCCCEEEEC T ss_conf 3898289588 No 8 >d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus caldolyticus [TaxId: 1394]} Probab=4.47 E-value=92 Score=12.67 Aligned_cols=19 Identities=32% Similarity=0.814 Sum_probs=10.9 Q ss_pred EEEEEEEEEECCCCCCHHHHH Q ss_conf 200245776046763466675 Q gi|254781164|r 7 EGYGFLSLRESDGRADFSDIS 27 (56) Q Consensus 7 egygflslresdgradfsdis 27 (56) .||||+.. .+|.--|-.+| T Consensus 13 kGfGFI~~--d~g~DiF~H~s 31 (66) T d1c9oa_ 13 KGYGFIEV--EGGSDVFVHFT 31 (66) T ss_dssp TTEEEEEE--TTEEEEEEEGG T ss_pred CCEEEEEE--CCCCEEEEEEH T ss_conf 99899986--69933999904 No 9 >d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]} Probab=4.24 E-value=1.3e+02 Score=11.86 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=25.1 Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 024577604676346667533799999986541 Q gi|254781164|r 9 YGFLSLRESDGRADFSDISEGIALLNIIYNTMK 41 (56) Q Consensus 9 ygflslresdgradfsdisegiallniiyntmk 41 (56) +--+.+||..|.-....--.+-||||--|||-+ T Consensus 8 l~nf~irEtQg~nsWCAgytmaalLnat~nt~~ 40 (173) T d1cv8a_ 8 LENFKIRETQGNNGWCAGYTMSALLNATYNTNK 40 (173) T ss_dssp CTTCCCCCCCCSSSCHHHHHHHHHHHHHHTCCC T ss_pred HCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 216405775376607788899999987515797 No 10 >d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human (Homo sapiens) [TaxId: 9606]} Probab=4.10 E-value=1.3e+02 Score=11.80 Aligned_cols=9 Identities=44% Similarity=1.136 Sum_probs=0.0 Q ss_pred EEEEEEEEE Q ss_conf 872002457 Q gi|254781164|r 5 FLEGYGFLS 13 (56) Q Consensus 5 flegygfls 13 (56) |..||||++ T Consensus 26 ~~~gfGFI~ 34 (89) T d1wfqa_ 26 LLTSYGFIQ 34 (89) T ss_dssp ECSSEEEEE T ss_pred ECCCCCEEE T ss_conf 557410487 Done!