RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781164|ref|YP_003065577.1| hypothetical protein
CLIBASIA_05355 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)



>gnl|CDD|146173 pfam03394, Pox_E8, Poxvirus E8 protein. 
          Length = 242

 Score = 24.3 bits (53), Expect = 8.7
 Identities = 12/40 (30%), Positives = 14/40 (35%)

Query: 8   GYGFLSLRESDGRADFSDISEGIALLNIIYNTMKKPVLSF 47
               +      GR   SD      L  I+Y T   PVL F
Sbjct: 168 IATIIHNNPPRGRLTPSDYETLANLSAILYYTKYDPVLMF 207


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.140    0.391 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 665,698
Number of extensions: 24578
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 3
Length of query: 56
Length of database: 6,263,737
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,658,685
Effective search space: 158443180
Effective search space used: 158443180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)