RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781164|ref|YP_003065577.1| hypothetical protein CLIBASIA_05355 [Candidatus Liberibacter asiaticus str. psy62] (56 letters) >gnl|CDD|172944 PRK14469, PRK14469, ribosomal RNA large subunit methyltransferase N; Provisional. Length = 343 Score = 24.3 bits (53), Expect = 7.6 Identities = 8/25 (32%), Positives = 16/25 (64%) Query: 27 SEGIALLNIIYNTMKKPVLSFENDV 51 E + N++Y M +P+L++EN + Sbjct: 144 EEKKKVGNVVYMGMGEPLLNYENVI 168 >gnl|CDD|162983 TIGR02712, urea_carbox, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. Length = 1201 Score = 24.2 bits (53), Expect = 8.6 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 7/28 (25%) Query: 8 GYGFLSLRESDGRADFSDI--SEGIALL 33 GYGFLS E+ A F++ + GI + Sbjct: 80 GYGFLS--EN---AAFAEACEAAGIVFV 102 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.140 0.391 Gapped Lambda K H 0.267 0.0715 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 912,214 Number of extensions: 40096 Number of successful extensions: 76 Number of sequences better than 10.0: 1 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 7 Length of query: 56 Length of database: 5,994,473 Length adjustment: 28 Effective length of query: 28 Effective length of database: 5,389,449 Effective search space: 150904572 Effective search space used: 150904572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.1 bits)