RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781164|ref|YP_003065577.1| hypothetical protein
CLIBASIA_05355 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)



>gnl|CDD|172944 PRK14469, PRK14469, ribosomal RNA large subunit methyltransferase
           N; Provisional.
          Length = 343

 Score = 24.3 bits (53), Expect = 7.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 27  SEGIALLNIIYNTMKKPVLSFENDV 51
            E   + N++Y  M +P+L++EN +
Sbjct: 144 EEKKKVGNVVYMGMGEPLLNYENVI 168


>gnl|CDD|162983 TIGR02712, urea_carbox, urea carboxylase.  Members of this family
           are ATP-dependent urea carboxylase, including
           characterized members from Oleomonas sagaranensis (alpha
           class Proteobacterium) and yeasts such as Saccharomyces
           cerevisiae. The allophanate hydrolase domain of the
           yeast enzyme is not included in this model and is
           represented by an adjacent gene in Oleomonas
           sagaranensis. The fusion of urea carboxylase and
           allophanate hydrolase is designated urea amidolyase. The
           enzyme from Oleomonas sagaranensis was shown to be
           highly active on acetamide and formamide as well as
           urea.
          Length = 1201

 Score = 24.2 bits (53), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 7/28 (25%)

Query: 8   GYGFLSLRESDGRADFSDI--SEGIALL 33
           GYGFLS  E+   A F++   + GI  +
Sbjct: 80  GYGFLS--EN---AAFAEACEAAGIVFV 102


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.140    0.391 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 912,214
Number of extensions: 40096
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 7
Length of query: 56
Length of database: 5,994,473
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,389,449
Effective search space: 150904572
Effective search space used: 150904572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)