HHsearch alignment for GI: 254781165 and conserved domain: TIGR03667
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=98.82 E-value=2.7e-08 Score=68.10 Aligned_cols=89 Identities=25% Similarity=0.336 Sum_probs=70.0
Q ss_pred HHCCCCCCCEEEEEEECCCCCEEEEEEEHHEEECCEEEEEECCCCCCHHHHHCCCCEEEEEECCCC-EEEEEEEEEEECC
Q ss_conf 985888955799985859987732210130000330589951785201223118947999736664-0899999875217
Q gi|254781165|r 24 QSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHWKSL-ARQLRVRGLVEKY 102 (201)
Q Consensus 24 ~~~~~~~p~a~~LaTvd~~g~p~~R~V~lr~~~~~g~~f~Tn~~S~K~~~l~~np~~al~f~w~~~-~rQiRi~G~~~~l 102 (201)
T Consensus 7 v~~RL~~~~~~wLaTv~~DG~P~~~PVWf-~~dg~~l~~~t~~~~~K~rNlrrdPrVsl~vd~~~~~~~~v~v~GtAevv 85 (130)
T TIGR03667 7 VARRLREESIVWLTTVRRSGQPQPVPVWF-LWDGTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRGGDVVVFTGTAEVV 85 (130)
T ss_pred HHHHHCCCCEEEEEEECCCCCCEEEEEEE-EEECCEEEEEECCCCHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEE
T ss_conf 99875357489999989899847823689-99999999996897688998753996799996488898779998799992
Q ss_pred CHH----HHHHHHHC
Q ss_conf 637----88897523
Q gi|254781165|r 103 CDL----ASDHYYAS 113 (201)
Q Consensus 103 ~~~----~~d~yf~~ 113 (201)
T Consensus 86 ~d~~~~~e~aa~~~k 100 (130)
T TIGR03667 86 ADAPPAREIPAYLAK 100 (130)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 789762256789988