HHsearch alignment of GI: 254781165 and MMDB domain: 1rfe_A_
>1rfe_A (A:) Hypothetical protein RV2991; structural genomics, TB, FMN binding, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis H37RV}
Probab=99.68 E-value=2.9e-17 Score=119.71 Aligned_cols=145 Identities=16% Similarity=0.150 Sum_probs=110.6
Q ss_pred HHHHHCCCCCCCEEEEEEECCCCCEEEEEEEHHEEECCEEEEEECCCCCCHHHHHCCCCEEEEEECC---CCEEEEEEEE
Q ss_conf 9999858889557999858599877322101300003305899517852012231189479997366---6408999998
Q gi|254781165|r 21 QEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHWK---SLARQLRVRG 97 (201)
Q Consensus 21 ~~A~~~~~~~p~a~~LaTvd~~g~p~~R~V~lr~~~~~g~~f~Tn~~S~K~~~l~~np~~al~f~w~---~~~rQiRi~G 97 (201)
.++...-..+...|+|||++.||.|.++.|.+ .++++.+.|+|+..|.|+++|..||+|+++|..+ ...++|++.|
T Consensus 12 ~~~~~~~L~~~~~~~LaTv~~dG~P~~~pv~~-~~d~~~l~~~t~~~~~k~~nl~~np~vsl~v~~~~~~~~~~~v~~~G 90 (162)
T 1rfe_A 12 EAEIADFVNSSRTGTLATIGPDGQPHLTAXWY-AVIDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTLRGVSFEG 90 (162)
T ss_dssp HHHHHHHHHHCCCEEEEEECTTSCEEEEEECC-EEETTEEEEEEETTSHHHHHHHHCCEEEEEEEECSSGGGCEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCEEEEEEEE-EECCCEEEEECCCCCEEEHHHCCCCEEEEEEECCCCCCCEEEEEEEE
T ss_conf 99999998169989999999999999999999-98288999981687726123256987999997288776715899999
Q ss_pred EEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCC
Q ss_conf 75217637888975238833350266217765678777788888888875057887797973279997007996137898
Q gi|254781165|r 98 LVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPY 177 (201)
Q Consensus 98 ~~~~l~~~~~d~yf~~Rp~~sqi~a~~s~QS~~i~s~~~l~~~~~~~~~~~~~~~ip~P~~w~g~~i~P~~iEFw~~~~~ 177 (201)
+|+.+++.+.......+........+.+. ..... .+..+.+.+|+|.|.++.+|..+++
T Consensus 91 ~a~~v~d~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-----------~~~~~~~~~~~i~p~~v~~~~~~~~ 149 (162)
T 1rfe_A 91 VAEIVEEPEALHRVGVSVWERYTGPYTDE----------XKPXV-----------DQXXNKRVGVRIVARRTRSWDHRKL 149 (162)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHTCCCCGG----------GHHHH-----------HHHTTTEEEEEEEEEEEEEEEGGGG
T ss_pred EEEEECCHHHHHHHHHHHHHHHCCCCCCH----------HHHHH-----------HCCCCCEEEEEEEEEEEEEEECCCC
T ss_conf 99997898999999999999865878201----------23466-----------5557998999999999999804556
Q ss_pred CCCEEEEEEE
Q ss_conf 6402699988
Q gi|254781165|r 178 RLHDRLLFSR 187 (201)
Q Consensus 178 rlHdR~~y~~ 187 (201)
|+|++.+|.+
T Consensus 150 ~~~~~~~~~~ 159 (162)
T 1rfe_A 150 GLPHXSVGGS 159 (162)
T ss_dssp CCCCCCCCST
T ss_pred CCCCCCCCCC
T ss_conf 6998998888