RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781165|ref|YP_003065578.1| pyridoxamine 5'-phosphate
oxidase [Candidatus Liberibacter asiaticus str. psy62]
(201 letters)
>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
{Escherichia coli [TaxId: 562]}
Length = 199
Score = 152 bits (384), Expect = 2e-38
Identities = 79/189 (41%), Positives = 110/189 (58%), Gaps = 2/189 (1%)
Query: 13 FTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGK 72
TL +W+ +A ++ DP A+V+AT D G P R+VL+KH+D++G VFYTN S K
Sbjct: 13 LTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAH 72
Query: 73 EILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMP 132
+I NP+ SL F W +L RQ+ V G E+ L Y+ SRPR+S+IGAW SKQS ++
Sbjct: 73 QIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRIS 132
Query: 133 SLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIAG 192
+ L+ +Q+ E+P P +W GFR+ IEFW +RLHDR L+ RE
Sbjct: 133 ARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRE--ND 190
Query: 193 KWTQFLLYP 201
W L P
Sbjct: 191 AWKIDRLAP 199
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 144 bits (364), Expect = 5e-36
Identities = 75/193 (38%), Positives = 108/193 (55%), Gaps = 4/193 (2%)
Query: 13 FTLLSQWMQEAQSSES-HDPHAVVLATADR-MGFPNARVVLIKHFDQEGFVFYTNS-QSP 69
L ++W EA+ P A+ ++A+ G ++R++L K D GF Y+N S
Sbjct: 13 IDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGFTIYSNWGTSR 72
Query: 70 KGKEILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQ 129
K +I NP A++ F WK L RQ+RV G+ E S+ Y+ +RPR SKIGAWAS+QS
Sbjct: 73 KAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSD 132
Query: 130 KMPSLDDLQKSVQRY-SSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRE 188
+ + ++L + Q+ F ++IP P +W G RI PL IEFW RP RLHDR ++ R+
Sbjct: 133 VIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRK 192
Query: 189 TIAGKWTQFLLYP 201
T W L P
Sbjct: 193 TENDPWKVVRLAP 205
>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 213
Score = 143 bits (360), Expect = 1e-35
Identities = 77/203 (37%), Positives = 116/203 (57%), Gaps = 14/203 (6%)
Query: 13 FTLLSQWMQEA-QSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKG 71
+ W +EA Q + + +A+ LAT R G P+AR++L+K F ++GF F+TN +S KG
Sbjct: 11 VKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKG 70
Query: 72 KEILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKM 131
KE+ NP ASL F+W+ L RQ+RV G V+K + ++ Y+ SRP+ S+IGA S QS +
Sbjct: 71 KELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVI 130
Query: 132 PSLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIA 191
P + L+K + YQ++E+P+P W G+ + P +EFW + RLHDR++F R
Sbjct: 131 PDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPT 190
Query: 192 G-------------KWTQFLLYP 201
G W L P
Sbjct: 191 GDSPLGPMTHRGEEDWLYERLAP 213
>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 204
Score = 133 bits (334), Expect = 1e-32
Identities = 60/189 (31%), Positives = 101/189 (53%), Gaps = 4/189 (2%)
Query: 13 FTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGK 72
+L W++ A+ +P A+ LAT D G P+ R+V+I + G VF T++ S KG+
Sbjct: 20 MEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGR 79
Query: 73 EILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMP 132
E+ +NP AS +W+ ++Q+ + G E+ D +D + SRP ++ + AS+QS+ +
Sbjct: 80 ELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLA 139
Query: 133 SLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIAG 192
+ L+ +R + +PRP + F +C S+EFW RLH+RL + R+ G
Sbjct: 140 DIHALRAEARRL--AETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRD--EG 195
Query: 193 KWTQFLLYP 201
W L P
Sbjct: 196 GWKHRYLQP 204
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP
oxidase) {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 201
Score = 132 bits (332), Expect = 2e-32
Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 8/190 (4%)
Query: 13 FTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGK 72
TLL +W+ +AQ + +P+A+VLAT G P R VL K D+ G F+T+ S KG+
Sbjct: 19 LTLLRRWLNDAQRAGVSEPNAMVLATVAD-GKPVTRSVLCKILDESGVAFFTSYTSAKGE 77
Query: 73 EILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMP 132
++ P AS F W L RQ V+G V K Y++ RPR +++GAWAS+QS+ +
Sbjct: 78 QLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVG 137
Query: 133 SLDDLQKSVQRYSSFYQEKE-IPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIA 191
S L + + + +++ IP P W G+RI P +EFW R R+H+R+ +
Sbjct: 138 SRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIRVAN---- 193
Query: 192 GKWTQFLLYP 201
L P
Sbjct: 194 --GRLERLQP 201
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 135
Score = 83.2 bits (205), Expect = 1e-17
Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 34/168 (20%)
Query: 17 SQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFV-FYTNSQSPKGKEIL 75
++ M+E V LA+ ++ G+P + + + T + S K + L
Sbjct: 1 TKTMKEKAVELLQKCEVVTLASVNKEGYPRPVPMSKIAAEGISTIWMSTGADSLKTIDFL 60
Query: 76 ENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLD 135
NPKA LCF K + + G VE D
Sbjct: 61 SNPKAGLCFQEKG--DSVALMGEVEVVTDEKLKQELW----------------------- 95
Query: 136 DLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRL 183
Q + + P + + +W E + +H +L
Sbjct: 96 ------QDWFIEHFPGGPTDPGYV-LLKFTANHATYWIEGTF-IHKKL 135
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc
punctiforme pcc 73102 [TaxId: 63737]}
Length = 143
Score = 81.3 bits (200), Expect = 5e-17
Identities = 18/159 (11%), Positives = 40/159 (25%), Gaps = 32/159 (20%)
Query: 29 HDPHAVVLATADRMGFPNAR--VVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHW 86
+ + T D G ++ + F+T + S K EI + + ++ F
Sbjct: 15 KNIDYGMFTTVDDDGSLHSYPMSKSGDINSEATLWFFTYAGSHKVTEIEHHEQVNVSFSS 74
Query: 87 KSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDDLQKSVQRYSS 146
R + + G + D + W
Sbjct: 75 PEQQRYVSISGTSQLVKDRNKMRELWKPELQ----TW----------------------- 107
Query: 147 FYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLF 185
F + + P ++ + +W + F
Sbjct: 108 FPKGLDEPD---IALLKVNINQVNYWDSTSSFKPQTISF 143
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium
acetobutylicum [TaxId: 1488]}
Length = 141
Score = 66.3 bits (161), Expect = 2e-12
Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 32/159 (20%)
Query: 18 QWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEG-FVFYTNSQSPKGKEILE 76
+++ E+ + V++ T G+PN + ++ D F TN+ + + + +
Sbjct: 4 KFLIES-NELVESSKIVMVGTNGENGYPNIKAMMRLKHDGLKKFWLSTNTSTRMVERLKK 62
Query: 77 NPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDD 136
N K L F + L + G +E D AS + E
Sbjct: 63 NNKICLYFVDDNKFAGLMLVGTIEILHDRASKEMLWTDGCEI------------------ 104
Query: 137 LQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSER 175
Y I P + ++
Sbjct: 105 -----------YYPLGIDDPDY-TALCFTAEWGNYYRHL 131
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 160
Score = 59.8 bits (144), Expect = 1e-10
Identities = 26/166 (15%), Positives = 44/166 (26%), Gaps = 26/166 (15%)
Query: 18 QWMQEAQSSES-HDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILE 76
M EA+ ++ + LAT G P+ + D T ++S K +
Sbjct: 7 IVMSEAEIADFVNSSRTGTLATIGPDGQPHLTAMWYAVID-GEIWLETKAKSQKAVNLRR 65
Query: 77 NPKASLCF---HWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPS 133
+P+ S R + G+ E + + H E G + +
Sbjct: 66 DPRVSFLLEDGDTYDTLRGVSFEGVAEIVEEPEALHRVGVSVWERYTGPYTDE------- 118
Query: 134 LDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRL 179
+ G RI W R L
Sbjct: 119 --------------CKPMVDQMMNKRVGVRIVARRTRSWDHRKLGL 150
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 142
Score = 59.1 bits (142), Expect = 2e-10
Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 1/101 (0%)
Query: 29 HDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFY-TNSQSPKGKEILENPKASLCFHWK 87
VLAT G P V ++ + K + + +P+AS+
Sbjct: 10 SGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDAD 69
Query: 88 SLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQS 128
G + A+ + A + S
Sbjct: 70 DGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHS 110
>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 125
Score = 42.7 bits (100), Expect = 2e-05
Identities = 15/99 (15%), Positives = 23/99 (23%), Gaps = 8/99 (8%)
Query: 30 DPHAVVLATADRMGFPNARVVLIKHF-DQEGFVFYTNSQSPKGKEILENPKASLCF---- 84
+ H +L T P+ V T S K + A L
Sbjct: 10 ERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGA 69
Query: 85 ---HWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKI 120
+ A V + Y RP ++
Sbjct: 70 RWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRV 108
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027
{Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}
Length = 135
Score = 40.9 bits (95), Expect = 8e-05
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 18 QWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILEN 77
++QE QS +++T G PN D + Y + + K I N
Sbjct: 3 GFIQEFQS--------AIISTISEQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEAN 54
Query: 78 PKASLCFH 85
P ++ F
Sbjct: 55 PLVNVLFV 62
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 238
Score = 38.2 bits (88), Expect = 5e-04
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 29 HDPHAVVLAT--ADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHW 86
+ VL+T GFP VV + + + + + +P+ S+
Sbjct: 13 LKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGE 72
>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 571
Score = 26.7 bits (57), Expect = 1.6
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 41 RMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHWKSLARQLR 94
+ G P +F +E V+Y S K +++ P A+ C W ++R
Sbjct: 516 KTGNPAQDGEEWPNFSKEDPVYYIFSTDDKIEKLARGPLAARCSFWNDYLPKVR 569
>d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain
{Escherichia coli [TaxId: 562]}
Length = 110
Score = 25.5 bits (56), Expect = 3.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 85 HWKSLARQLRVRGLVEK 101
HW S+ RQL GLV +
Sbjct: 62 HWVSVIRQLIHLGLVTQ 78
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 276
Score = 24.9 bits (54), Expect = 4.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 121 GAWASKQSQKMPSLDDLQKSVQRYSSFYQEKEIPRPVWWH 160
G+W +QS +L++S QR+++FY + R + W
Sbjct: 133 GSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWL 172
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 273
Score = 25.0 bits (54), Expect = 4.9
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 121 GAWASKQSQKMPSLDDLQKSVQRYSSFYQEKEIPRPVWWH 160
G W + ++ ++ K + + +FY K R + W
Sbjct: 129 GYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQ 168
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.428
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 786,490
Number of extensions: 34085
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 19
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)