HHsearch alignment for GI: 254781166 and conserved domain: COG1086
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].
Probab=99.52 E-value=7.9e-12 Score=96.99 Aligned_cols=227 Identities=16% Similarity=0.130 Sum_probs=153.8
Q ss_pred CCHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHH
Q ss_conf 1232299789994889884179999999998898899-9848988999999997138---92899988899999999999
Q gi|254781166|r 4 VDNLMKDKRGIVLGVANNRSLAWSIAKMCHAAGAKVA-LTWQGDATKKRIEGLVEGM---DFFMAGHCNVSNSETIDDVF 79 (284)
Q Consensus 4 ~~~~L~~K~~iVtGa~g~~GIG~aiA~~la~~Ga~Vv-i~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~ 79 (284)
T Consensus 244 i~~~~~gK~vLVTGagGS--iGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~ 321 (588)
T COG1086 244 IGAMLTGKTVLVTGGGGS--IGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAM 321 (588)
T ss_pred HHHHCCCCEEEEECCCCC--HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
T ss_conf 986707988999689873--679999999854987899961763779999999986278751689963534689999998
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCH
Q ss_conf 99999847988999627212742125862135899985564026402322346788741012210001333234677201
Q gi|254781166|r 80 RNLEKEWGTIDFLVHAIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMNKGGSMLTLTYLGADKVMPHY 159 (284)
Q Consensus 80 ~~~~~~~G~iD~lInnag~~~~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~~~G~IInisS~~~~~~~p~~ 159 (284)
T Consensus 322 ~~~-----kvd~VfHAAA~KH-----VPl~E---~nP~Eai~tNV~GT~nv~~aa~~~--~V~~~V~iSTDKAV~Pt--- 383 (588)
T COG1086 322 EGH-----KVDIVFHAAALKH-----VPLVE---YNPEEAIKTNVLGTENVAEAAIKN--GVKKFVLISTDKAVNPT--- 383 (588)
T ss_pred HCC-----CCCEEEEHHHHCC-----CCCHH---CCHHHHHHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCCCCC---
T ss_conf 638-----8866887555536-----86310---188999987217389999999983--97789997058666884---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHCCCC-------CC-CCCHHHHHH
Q ss_conf 2445448999999999999827742379985223872694563189938999999826889-------98-766999999
Q gi|254781166|r 160 NCMGPAKAALQSAVRYLAMDLGRQSGIRVNALSAGPAKTLASSGISDFRYILKWNEYNSPL-------GR-NITHDEVAK 231 (284)
Q Consensus 160 ~~Y~asKaai~~ltk~lA~elg~~~gIRVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl-------gR-~g~peeiA~ 231 (284)
T Consensus 384 NvmGaTKr~aE~~~~a~~~~~~~~-~T~f~~VRFGNVlGSrGSV---iPlFk~QI~~GgplTvTdp~mtRyfMTI~EAv~ 459 (588)
T COG1086 384 NVMGATKRLAEKLFQAANRNVSGT-GTRFCVVRFGNVLGSRGSV---IPLFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQ 459 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC-CCEEEEEEECCEECCCCCC---HHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHH
T ss_conf 176688999999999974104888-8579999825454588777---788999997599845468670567888999999
Q ss_pred HHHHHHCHHHCCCCCCEEEECCCCCE
Q ss_conf 99986098878868868997598661
Q gi|254781166|r 232 SALYLLSDFSSGVTGECHYVDAGYHI 257 (284)
Q Consensus 232 av~fL~Sd~s~~iTG~~i~vDGG~s~ 257 (284)
T Consensus 460 LVlqA~a---~~~gGeifvldMGepv 482 (588)
T COG1086 460 LVLQAGA---IAKGGEIFVLDMGEPV 482 (588)
T ss_pred HHHHHHH---HCCCCCEEEECCCCCE
T ss_conf 9999875---0689858998189972