HHsearch alignment for GI: 254781166 and conserved domain: COG1091
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane].
Probab=98.82 E-value=5.3e-08 Score=72.02 Aligned_cols=178 Identities=19% Similarity=0.232 Sum_probs=121.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99948898841799999999988988999848988999999997138928999888999999999999999984798899
Q gi|254781166|r 13 GIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMDFFMAGHCNVSNSETIDDVFRNLEKEWGTIDFL 92 (284)
Q Consensus 13 ~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD~l 92 (284)
T Consensus 3 iLi~G~~Gq--LG~~L~~~l~-~~~~v~a~~~~~--------------------~Ditd~~~v~~~i~~~-----~PDvV 54 (281)
T COG1091 3 ILITGANGQ--LGTELRRALP-GEFEVIATDRAE--------------------LDITDPDAVLEVIRET-----RPDVV 54 (281)
T ss_pred EEEECCCCH--HHHHHHHHHC-CCCEEEECCCCC--------------------CCCCCHHHHHHHHHHH-----CCCEE
T ss_conf 899769876--7999999717-784399515765--------------------5556858999999861-----99989
Q ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCC---CCCCC--------CHHH
Q ss_conf 962721274212586213589998556402640232234678874101221000133323---46772--------0124
Q gi|254781166|r 93 VHAIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMNKGGSMLTLTYLGA---DKVMP--------HYNC 161 (284)
Q Consensus 93 Innag~~~~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~~~G~IInisS~~~---~~~~p--------~~~~ 161 (284)
T Consensus 55 In~AAyt~vD--------~aE~~~e~A~~vNa~~~~~lA~aa~~---~ga~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nv 123 (281)
T COG1091 55 INAAAYTAVD--------KAESEPELAFAVNATGAENLARAAAE---VGARLVHISTDYVFDGEKGGPYKETDTPNPLNV 123 (281)
T ss_pred EECCCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHH---HCCEEEEEECCEEECCCCCCCCCCCCCCCCHHH
T ss_conf 9873203654--------13389899777677999999999997---197699963445743898988877899997024
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCHHHHCCCCHH-HHHHHHHHCCCC-------CCCCCHHHHHHH
Q ss_conf 45448999999999999827742-379985223872694563189938-999999826889-------987669999999
Q gi|254781166|r 162 MGPAKAALQSAVRYLAMDLGRQS-GIRVNALSAGPAKTLASSGISDFR-YILKWNEYNSPL-------GRNITHDEVAKS 232 (284)
Q Consensus 162 Y~asKaai~~ltk~lA~elg~~~-gIRVN~I~PG~i~T~~~~~~~~~~-~~~~~~~~~~pl-------gR~g~peeiA~a 232 (284)
T Consensus 124 YG~sKl~GE~~v~~~~----~~~~I~Rts-wv~g~~g-------~nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~ 191 (281)
T COG1091 124 YGRSKLAGEEAVRAAG----PRHLILRTS-WVYGEYG-------NNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADA 191 (281)
T ss_pred HHHHHHHHHHHHHHHC----CCEEEEEEE-EEECCCC-------CCHHHHHHHHHHCCCCEEEECCEEECCCCHHHHHHH
T ss_conf 5477897899999739----987999856-5545888-------778999999850599269979845387469999999
Q ss_pred HHHHHCHHH
Q ss_conf 998609887
Q gi|254781166|r 233 ALYLLSDFS 241 (284)
Q Consensus 233 v~fL~Sd~s 241 (284)
T Consensus 192 i~~ll~~~~ 200 (281)
T COG1091 192 ILELLEKEK 200 (281)
T ss_pred HHHHHHCCC
T ss_conf 999983455