HHsearch alignment for GI: 254781166 and conserved domain: PRK09009
>PRK09009 C factor cell-cell signaling protein; Provisional.
Probab=100.00 E-value=0 Score=332.19 Aligned_cols=224 Identities=15% Similarity=0.169 Sum_probs=185.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 89994889884179999999998898899984898899999999713892899988899999999999999998479889
Q gi|254781166|r 12 RGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMDFFMAGHCNVSNSETIDDVFRNLEKEWGTIDF 91 (284)
Q Consensus 12 ~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD~ 91 (284)
T Consensus 2 nVLITGas--~GIG~aia~~l~~~~~~~~v~~~~~~~~~-----~~~~~~v~~~~~Dvt~~~~i~~~----~~~~~~iD~ 70 (235)
T PRK09009 2 NILIVGGS--GGIGKAMVKQLLETYPDATVHATYRHHKP-----DFRHDNVQWHALDVTDEAEIKQL----SEQFTQLDW 70 (235)
T ss_pred EEEEECCC--HHHHHHHHHHHHHCCCCEEEEEEECCCCC-----CCCCCCEEEEECCCCCHHHHHHH----HHHHCCCCE
T ss_conf 79997556--39999999999856998099997377654-----44579838998747999999999----987087789
Q ss_pred EEECCCCCCCC--CCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCC--CCCEECCCCCCCCC---CCCCHHHHHH
Q ss_conf 99627212742--12586213589998556402640232234678874101--22100013332346---7720124454
Q gi|254781166|r 92 LVHAIAFSDKA--ELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMNK--GGSMLTLTYLGADK---VMPHYNCMGP 164 (284)
Q Consensus 92 lInnag~~~~~--~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~~--~G~IInisS~~~~~---~~p~~~~Y~a 164 (284)
T Consensus 71 linnAGi~~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~l~~~~~~~iv~isS~~g~i~~~~~~g~~~Y~a 150 (235)
T PRK09009 71 LINCVGMLHTQDKGPEKSLQSLDSDFFLQNITLNTLPSLLLAKHFTPLLKQSESARFAVISAKVGSISDNRLGGWYSYRA 150 (235)
T ss_pred EEECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 99767524467777646867789999999998861999999999999998607876401222341577888886236699
Q ss_pred HHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHCC
Q ss_conf 4899999999999982774-237998522387269456318993899999982688998766999999999860988788
Q gi|254781166|r 165 AKAALQSAVRYLAMDLGRQ-SGIRVNALSAGPAKTLASSGISDFRYILKWNEYNSPLGRNITHDEVAKSALYLLSDFSSG 243 (284)
Q Consensus 165 sKaai~~ltk~lA~elg~~-~gIRVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~plgR~g~peeiA~av~fL~Sd~s~~ 243 (284)
T Consensus 151 SKaAl~~lt~~la~E~~~~~~~i~V~~i~PG~v~T~m~~~----------~~~~~p~~r~~~PeeiA~~i~~L~s~~s~~ 220 (235)
T PRK09009 151 SKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTPLSKP----------FQQNVPKGKLFTPEYVAQCLLGIIANATPA 220 (235)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCH----------HHHCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999997642699689998148656712306----------785799888829999999999997169723
Q ss_pred CCCCEEEECCCCC
Q ss_conf 6886899759866
Q gi|254781166|r 244 VTGECHYVDAGYH 256 (284)
Q Consensus 244 iTG~~i~vDGG~s 256 (284)
T Consensus 221 ~tG~~i~vdG~~~ 233 (235)
T PRK09009 221 QSGSFLAYDGEEL 233 (235)
T ss_pred CCCCEEEECCCCC
T ss_conf 6988897897787