HHsearch alignment for GI: 254781166 and conserved domain: PRK09009

>PRK09009 C factor cell-cell signaling protein; Provisional.
Probab=100.00  E-value=0  Score=332.19  Aligned_cols=224  Identities=15%  Similarity=0.169  Sum_probs=185.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf             89994889884179999999998898899984898899999999713892899988899999999999999998479889
Q gi|254781166|r   12 RGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMDFFMAGHCNVSNSETIDDVFRNLEKEWGTIDF   91 (284)
Q Consensus        12 ~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD~   91 (284)
T Consensus         2 nVLITGas--~GIG~aia~~l~~~~~~~~v~~~~~~~~~-----~~~~~~v~~~~~Dvt~~~~i~~~----~~~~~~iD~   70 (235)
T PRK09009          2 NILIVGGS--GGIGKAMVKQLLETYPDATVHATYRHHKP-----DFRHDNVQWHALDVTDEAEIKQL----SEQFTQLDW   70 (235)
T ss_pred             EEEEECCC--HHHHHHHHHHHHHCCCCEEEEEEECCCCC-----CCCCCCEEEEECCCCCHHHHHHH----HHHHCCCCE
T ss_conf             79997556--39999999999856998099997377654-----44579838998747999999999----987087789


Q ss_pred             EEECCCCCCCC--CCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCC--CCCEECCCCCCCCC---CCCCHHHHHH
Q ss_conf             99627212742--12586213589998556402640232234678874101--22100013332346---7720124454
Q gi|254781166|r   92 LVHAIAFSDKA--ELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMNK--GGSMLTLTYLGADK---VMPHYNCMGP  164 (284)
Q Consensus        92 lInnag~~~~~--~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~~--~G~IInisS~~~~~---~~p~~~~Y~a  164 (284)
T Consensus        71 linnAGi~~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~l~~~~~~~iv~isS~~g~i~~~~~~g~~~Y~a  150 (235)
T PRK09009         71 LINCVGMLHTQDKGPEKSLQSLDSDFFLQNITLNTLPSLLLAKHFTPLLKQSESARFAVISAKVGSISDNRLGGWYSYRA  150 (235)
T ss_pred             EEECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf             99767524467777646867789999999998861999999999999998607876401222341577888886236699


Q ss_pred             HHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHCC
Q ss_conf             4899999999999982774-237998522387269456318993899999982688998766999999999860988788
Q gi|254781166|r  165 AKAALQSAVRYLAMDLGRQ-SGIRVNALSAGPAKTLASSGISDFRYILKWNEYNSPLGRNITHDEVAKSALYLLSDFSSG  243 (284)
Q Consensus       165 sKaai~~ltk~lA~elg~~-~gIRVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~plgR~g~peeiA~av~fL~Sd~s~~  243 (284)
T Consensus       151 SKaAl~~lt~~la~E~~~~~~~i~V~~i~PG~v~T~m~~~----------~~~~~p~~r~~~PeeiA~~i~~L~s~~s~~  220 (235)
T PRK09009        151 SKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTPLSKP----------FQQNVPKGKLFTPEYVAQCLLGIIANATPA  220 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCH----------HHHCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             9999999999999997642699689998148656712306----------785799888829999999999997169723


Q ss_pred             CCCCEEEECCCCC
Q ss_conf             6886899759866
Q gi|254781166|r  244 VTGECHYVDAGYH  256 (284)
Q Consensus       244 iTG~~i~vDGG~s  256 (284)
T Consensus       221 ~tG~~i~vdG~~~  233 (235)
T PRK09009        221 QSGSFLAYDGEEL  233 (235)
T ss_pred             CCCCEEEECCCCC
T ss_conf             6988897897787