HHsearch alignment for GI: 254781166 and conserved domain: TIGR01139

>TIGR01139 cysK cysteine synthase A; InterPro: IPR005859 This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=90.26  E-value=1.5  Score=23.48  Aligned_cols=93  Identities=22%  Similarity=0.258  Sum_probs=62.3

Q ss_pred             CHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEC---CHH-----------------------HHHHHHHHHHC
Q ss_conf             2322997899948898841799999999988988999848---988-----------------------99999999713
Q gi|254781166|r    5 DNLMKDKRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQ---GDA-----------------------TKKRIEGLVEG   58 (284)
Q Consensus         5 ~~~L~~K~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~---~~~-----------------------~~~~~~~~~~~   58 (284)
T Consensus        53 ~G~lk~G~~IvEpTSGNTGIaLAmv--AAArGYkliltMPetMS~ERr~lL~ayGAeLvLTpg~~GMkGAI~KA~Ei~~~  130 (312)
T TIGR01139        53 RGLLKPGKTIVEPTSGNTGIALAMV--AAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAES  130 (312)
T ss_pred             CCCCCCCCEEEECCCCCHHHHHHHH--HHHHCCEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             5886888889823777326999999--98718949998674326899999987096588728123766678999999986


Q ss_pred             CCC-E-EEEE-CCCCCHHHHHH-HHHHHHHHH-CC--CCEEEECCCCC
Q ss_conf             892-8-9998-88999999999-999999984-79--88999627212
Q gi|254781166|r   59 MDF-F-MAGH-CNVSNSETIDD-VFRNLEKEW-GT--IDFLVHAIAFS   99 (284)
Q Consensus        59 ~~~-~-~~~~-~Dv~~~~~v~~-~~~~~~~~~-G~--iD~lInnag~~   99 (284)
T Consensus       131 ~Pn~y~m~~QF~NpANP~~Hr~TTg~EIw~d~dg~G~~D~FVaG~GTG  178 (312)
T TIGR01139       131 TPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKGRLDAFVAGVGTG  178 (312)
T ss_pred             CCCCEEECCCCCCCCHHHHHHHCCHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf             879265224578722147616202789999627898311799732368