HHsearch alignment for GI: 254781166 and conserved domain: TIGR01372

>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=91.96  E-value=0.25  Score=28.49  Aligned_cols=68  Identities=15%  Similarity=0.099  Sum_probs=41.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC-CCCE
Q ss_conf             999488988417999999999889889998489889999999971389289998889999999999999999847-9889
Q gi|254781166|r   13 GIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMDFFMAGHCNVSNSETIDDVFRNLEKEWG-TIDF   91 (284)
Q Consensus        13 ~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G-~iD~   91 (284)
T Consensus       179 VLVVGaGP---AGLAAA~aAa~~GArViL~DE~~~----------~GGsL~~~~g~~IDG~PA~~W~~~t~aeL~a~~~v  245 (1026)
T TIGR01372       179 VLVVGAGP---AGLAAALAAARAGARVILVDEQAE----------AGGSLLSEAGETIDGKPAADWAAATVAELEALPEV  245 (1026)
T ss_pred             EEEECCCH---HHHHHHHHHHHCCCEEEEEECCCC----------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf             78878896---799999999647988999706765----------77755677876017801899999999997418981


Q ss_pred             EE
Q ss_conf             99
Q gi|254781166|r   92 LV   93 (284)
Q Consensus        92 lI   93 (284)
T Consensus       246 ~~  247 (1026)
T TIGR01372       246 TL  247 (1026)
T ss_pred             EE
T ss_conf             67