HHsearch alignment for GI: 254781166 and conserved domain: TIGR01372
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=91.96 E-value=0.25 Score=28.49 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=41.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC-CCCE
Q ss_conf 999488988417999999999889889998489889999999971389289998889999999999999999847-9889
Q gi|254781166|r 13 GIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMDFFMAGHCNVSNSETIDDVFRNLEKEWG-TIDF 91 (284)
Q Consensus 13 ~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G-~iD~ 91 (284)
T Consensus 179 VLVVGaGP---AGLAAA~aAa~~GArViL~DE~~~----------~GGsL~~~~g~~IDG~PA~~W~~~t~aeL~a~~~v 245 (1026)
T TIGR01372 179 VLVVGAGP---AGLAAALAAARAGARVILVDEQAE----------AGGSLLSEAGETIDGKPAADWAAATVAELEALPEV 245 (1026)
T ss_pred EEEECCCH---HHHHHHHHHHHCCCEEEEEECCCC----------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 78878896---799999999647988999706765----------77755677876017801899999999997418981
Q ss_pred EE
Q ss_conf 99
Q gi|254781166|r 92 LV 93 (284)
Q Consensus 92 lI 93 (284)
T Consensus 246 ~~ 247 (1026)
T TIGR01372 246 TL 247 (1026)
T ss_pred EE
T ss_conf 67