HHsearch alignment for GI: 254781166 and conserved domain: TIGR01777
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=98.00 E-value=2.6e-05 Score=54.53 Aligned_cols=212 Identities=13% Similarity=0.096 Sum_probs=108.4
Q ss_pred EEEECC-CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 999488-9884179999999998898899984898899999999713-89289998889999999999999999847988
Q gi|254781166|r 13 GIVLGV-ANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEG-MDFFMAGHCNVSNSETIDDVFRNLEKEWGTID 90 (284)
Q Consensus 13 ~iVtGa-~g~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 90 (284)
T Consensus 1 ~litGgnTGf--iG~~L~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----W-----~~l~~~D 69 (307)
T TIGR01777 1 ILITGGNTGF--IGRALTQRLTKSGHEVTILTRSPQAESNTKKVGYKNWLAEGKLGIVIAESG----W-----SALEGAD 69 (307)
T ss_pred CEECCCCCCH--HHHHHHHHHHHCCCEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCHHC----C-----CCCCCCC
T ss_conf 9641533023--789999999847998999961686432000255445555221245207220----5-----6678862
Q ss_pred EEEECCCCCCCCCCCCCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHHH--HCCC-CCEECCCCCCCCCCCCCHHHHH---
Q ss_conf 9996272127421258621358999855640-2640232234678874--1012-2100013332346772012445---
Q gi|254781166|r 91 FLVHAIAFSDKAELTGPYINTTRENFLNTMD-VSVYSFTALAARASSL--MNKG-GSMLTLTYLGADKVMPHYNCMG--- 163 (284)
Q Consensus 91 ~lInnag~~~~~~~~~~~~~~~~e~~~~~~~-vnl~~~~~~~k~~~~~--m~~~-G~IInisS~~~~~~~p~~~~Y~--- 163 (284)
T Consensus 70 aviNLAG~~i~~----P--~RWt~~~K~~i~~SRi~~T~~L~~~i~~~~r~~~~P~~~isaSA-vGyYG~~~~~~~tE~~ 142 (307)
T TIGR01777 70 AVINLAGEPIAD----P--KRWTEERKQEIRDSRIDTTRALVEAIAAAPRAEQKPKVFISASA-VGYYGHSEDRVFTEED 142 (307)
T ss_pred EEEECCCCCCCC----C--CCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEE-EEEECCCCCCEEECCC
T ss_conf 798556888577----8--88787775756523347899999999846566788716885016-6630689982151166
Q ss_pred --HHHH-HHHHHHHHH---HHHHCCCCCEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHCCCCC--C----CCCHHHHHH
Q ss_conf --4489-999999999---998277423799852238726945631899389999998268899--8----766999999
Q gi|254781166|r 164 --PAKA-ALQSAVRYL---AMDLGRQSGIRVNALSAGPAKTLASSGISDFRYILKWNEYNSPLG--R----NITHDEVAK 231 (284)
Q Consensus 164 --asKa-ai~~ltk~l---A~elg~~~gIRVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~plg--R----~g~peeiA~ 231 (284)
T Consensus 143 ~~~~~ddFla~lc~~WE~~A~~a-~~~g~Rvv~~R~G~VLg~~GGaL~~m~~pf~~g-lGGplG~G~Q~~SWIH~~D~v~ 220 (307)
T TIGR01777 143 ASGPGDDFLAELCRDWEEAAQAA-EQLGTRVVLLRTGIVLGPKGGALAKMLPPFRLG-LGGPLGSGRQWFSWIHIEDLVQ 220 (307)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHH
T ss_conf 78887772189999999985105-336873898764134708987034545667651-5742368841450535889999
Q ss_pred HHHHHHCHHHCCCCC
Q ss_conf 999860988788688
Q gi|254781166|r 232 SALYLLSDFSSGVTG 246 (284)
Q Consensus 232 av~fL~Sd~s~~iTG 246 (284)
T Consensus 221 ~I~~~l~~--~~~~G 233 (307)
T TIGR01777 221 LILFALEN--ASVSG 233 (307)
T ss_pred HHHHHHHC--CCCCC
T ss_conf 99999855--89963