HHsearch alignment for GI: 254781166 and conserved domain: TIGR01963
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=100.00 E-value=0 Score=441.85 Aligned_cols=241 Identities=26% Similarity=0.351 Sum_probs=221.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 978999488988417999999999889889998489--88999999997-138928999888999999999999999984
Q gi|254781166|r 10 DKRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQG--DATKKRIEGLV-EGMDFFMAGHCNVSNSETIDDVFRNLEKEW 86 (284)
Q Consensus 10 ~K~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~--~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (284)
T Consensus 1 ~ktalVTGaaS--GIG~~iA~~LA~aGa~v~~~d~~~~~~~~~~~~~~~~~~G~~v~~~~~D~T~~~e~~~~~~~~~~~f 78 (258)
T TIGR01963 1 GKTALVTGAAS--GIGLAIAKALAAAGANVVVNDLGEADEGAEAAAKVATDAGGSVIYLVADVTKEEEIADMIQAVAAEF 78 (258)
T ss_pred CCEEEEECCCH--HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 94899965871--6789999999872988998467887899999999999618835775147888899999999999985
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCC--CC-CEECCCCCCCCCCCCCHHHHH
Q ss_conf 798899962721274212586213589998556402640232234678874101--22-100013332346772012445
Q gi|254781166|r 87 GTIDFLVHAIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMNK--GG-SMLTLTYLGADKVMPHYNCMG 163 (284)
Q Consensus 87 G~iD~lInnag~~~~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~~--~G-~IInisS~~~~~~~p~~~~Y~ 163 (284)
T Consensus 79 G~~DiLVNNAG~Qh----VaPiEeFP~~~w~~iiav~LtsaF~t~raAlP~Mk~~gwGGRIiNIAS~HGLvASp~KSAYV 154 (258)
T TIGR01963 79 GGLDILVNNAGIQH----VAPIEEFPPEKWDRIIAVMLTSAFHTIRAALPHMKKQGWGGRIINIASVHGLVASPFKSAYV 154 (258)
T ss_pred CCCCEEEECCCEEE----CCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHH
T ss_conf 68874884464014----17654778667873730216888999975064321378553799710100000353213456
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH----------HCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 44899999999999982774237998522387269456----------31899389999998268899876699999999
Q gi|254781166|r 164 PAKAALQSAVRYLAMDLGRQSGIRVNALSAGPAKTLAS----------SGISDFRYILKWNEYNSPLGRNITHDEVAKSA 233 (284)
Q Consensus 164 asKaai~~ltk~lA~elg~~~gIRVN~I~PG~i~T~~~----------~~~~~~~~~~~~~~~~~plgR~g~peeiA~av 233 (284)
T Consensus 155 AAKHG~~GLTKv~ALE~A~~-giT~NaiCPGYV~TPLV~~Qi~DqAk~rGi~eE~V~~~VmL~~~P~k~F~~~~e~A~~a 233 (258)
T TIGR01963 155 AAKHGLIGLTKVLALEVAAH-GITANAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLKKQPTKRFVTVDEVAETA 233 (258)
T ss_pred HHHHHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 77430212115555420478-87586672875675546765899986518899888898607888984113799999999
Q ss_pred HHHHCHHHCCCCCCEEEECCCCCE
Q ss_conf 986098878868868997598661
Q gi|254781166|r 234 LYLLSDFSSGVTGECHYVDAGYHI 257 (284)
Q Consensus 234 ~fL~Sd~s~~iTG~~i~vDGG~s~ 257 (284)
T Consensus 234 ~fLaS~~A~~~TG~~~~~DGGWtA 257 (258)
T TIGR01963 234 LFLASDAAAGITGQAIVLDGGWTA 257 (258)
T ss_pred HHHCCHHHHCCCCEEEEECCCEEC
T ss_conf 984173442366207886484332