HHsearch alignment for GI: 254781166 and conserved domain: TIGR02813
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA; InterPro: IPR004432 Members of this entry represent PfaA, which is involved in omega-3 polyunsaturated fatty acid biosynthesis, for example PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is found together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologues of PfaA, also included in this entry, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis; an alternative to the more familiar iterated mechanism of chain extension and desaturation, and like PfaA the more distant homologues are likewise found near genes for homologues of PfaB, PfaC, and/or PfaD..
Probab=98.36 E-value=7.8e-05 Score=51.39 Aligned_cols=224 Identities=18% Similarity=0.147 Sum_probs=152.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEECCHHH-----------------HH--------------------
Q ss_conf 997899948898841799999999988-9889998489889-----------------99--------------------
Q gi|254781166|r 9 KDKRGIVLGVANNRSLAWSIAKMCHAA-GAKVALTWQGDAT-----------------KK-------------------- 50 (284)
Q Consensus 9 ~~K~~iVtGa~g~~GIG~aiA~~la~~-Ga~Vvi~~~~~~~-----------------~~-------------------- 50 (284)
T Consensus 2158 ~~~~~LV~G--GAKGVT~~C~l~lAK~~~a~FiL~GRS~~~~~~~~P~WA~G~s~~~~LK~AA~~~l~~~GeKPTP~~V~ 2235 (2773)
T TIGR02813 2158 KDDKVLVTG--GAKGVTFECALELAKQCQAHFILAGRSSHIADDELPSWAQGKSDENELKKAAIQHLQASGEKPTPKKVD 2235 (2773)
T ss_pred CCCCEEEEC--CCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 687178837--876225999999987532114550330455520687410465035678999999998638998852258
Q ss_pred ----------HH----HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC----CCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf ----------99----99971389289998889999999999999999847----9889996272127421258621358
Q gi|254781166|r 51 ----------RI----EGLVEGMDFFMAGHCNVSNSETIDDVFRNLEKEWG----TIDFLVHAIAFSDKAELTGPYINTT 112 (284)
Q Consensus 51 ----------~~----~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G----~iD~lInnag~~~~~~~~~~~~~~~ 112 (284)
T Consensus 2236 ~lv~PV~s~~EI~~aLaA~~a~Ga~A~Y~s~DV~~s~sva~~~~~~~~~~g~gsl~iTGiIHGAGVLAD----K~I~~KT 2311 (2773)
T TIGR02813 2236 ALVKPVLSSLEIAQALAAFKAVGASAEYLSVDVTDSVSVAATVAPLNKLLGQGSLDITGIIHGAGVLAD----KHIQDKT 2311 (2773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHH----HHHHHHH
T ss_conf 664123545789999999985188714788604884789999999998616876210036644113423----4453401
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 99985564026402322346788741012210001333234677201244544899999999999982774237998522
Q gi|254781166|r 113 RENFLNTMDVSVYSFTALAARASSLMNKGGSMLTLTYLGADKVMPHYNCMGPAKAALQSAVRYLAMDLGRQSGIRVNALS 192 (284)
Q Consensus 113 ~e~~~~~~~vnl~~~~~~~k~~~~~m~~~G~IInisS~~~~~~~p~~~~Y~asKaai~~ltk~lA~elg~~~gIRVN~I~ 192 (284)
T Consensus 2312 L~E~~~VYgTKv~GL~~lL~a~~~--~~~K~~~lFSSAAGFYGN~GQSDYa~sNdILNKaAl~l~~~~-P~--A~V~SF~ 2386 (2773)
T TIGR02813 2312 LEEFNAVYGTKVDGLESLLAALNA--EKIKLVALFSSAAGFYGNTGQSDYAMSNDILNKAALQLKARN-PE--AKVLSFN 2386 (2773)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHCH--HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CC--CEEEECC
T ss_conf 787753520016889999975143--106577875110245788885317788888889999998619-97--3387314
Q ss_pred CCCCCCHHHHCCCCHHHHHHHHHH----CCCCCCCCCHHHHHHHHHHHHCHHHCCCCCCEEEECCCCCEE
Q ss_conf 387269456318993899999982----688998766999999999860988788688689975986613
Q gi|254781166|r 193 AGPAKTLASSGISDFRYILKWNEY----NSPLGRNITHDEVAKSALYLLSDFSSGVTGECHYVDAGYHIV 258 (284)
Q Consensus 193 PG~i~T~~~~~~~~~~~~~~~~~~----~~plgR~g~peeiA~av~fL~Sd~s~~iTG~~i~vDGG~s~~ 258 (284)
T Consensus 2387 WGP----WDGGMV-~p~LKkMF~DRGVYvIPL~--------AGA~L~-~S~L~s-dT~rc~QlLVG~d~~ 2441 (2773)
T TIGR02813 2387 WGP----WDGGMV-NPALKKMFIDRGVYVIPLD--------AGAELF-VSQLLS-DTGRCAQLLVGTDLQ 2441 (2773)
T ss_pred CCC----CCCCCC-CHHHHHHHHCCCCEEEECH--------HHHHHH-HHHHHH-HCCCEEEEEECCCCC
T ss_conf 788----887622-7678744303860785003--------206899-998864-006778777626423