HHsearch alignment for GI: 254781166 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=99.53 E-value=1.1e-12 Score=102.69 Aligned_cols=210 Identities=14% Similarity=0.112 Sum_probs=139.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 89994889884179999999998898899984898899999999713892899988899999999999999998479889
Q gi|254781166|r 12 RGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMDFFMAGHCNVSNSETIDDVFRNLEKEWGTIDF 91 (284)
Q Consensus 12 ~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD~ 91 (284)
T Consensus 2 riLVTGgtG--fiG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~-----~~~~~~~gDl~d~~~~~~~~~-------~~d~ 67 (328)
T TIGR03466 2 KVLVTGATG--FVGSAVVRLLLERGEEVRVLVRPTSDRRNLEG-----LDVEIVEGDLRDPASLRKALA-------GCRA 67 (328)
T ss_pred EEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCHHHHCC-----CCCEEEEEECCCHHHHHHHHH-------CCCE
T ss_conf 499986777--99999999999784989999899986556521-----797799820799999999971-------7858
Q ss_pred EEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC-------------C
Q ss_conf 996272127421258621358999855640264023223467887410122100013332346772-------------0
Q gi|254781166|r 92 LVHAIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMNKGGSMLTLTYLGADKVMP-------------H 158 (284)
Q Consensus 92 lInnag~~~~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~~~G~IInisS~~~~~~~p-------------~ 158 (284)
T Consensus 68 ViH~Aa~~~~-------~~---~~~~~~~~~Nv~gt~nll~aa~~~--~v~r~V~~SS~~v~g~~~~~~~~~E~~p~~~~ 135 (328)
T TIGR03466 68 LFHVAADYRL-------WA---PDPEEMYRANVEGTRNLLRAALEA--GVERVVYTSSVATLGVPGDGTPADETTPSSLE 135 (328)
T ss_pred EEEECCCCCC-------CC---CCHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 9761342344-------67---998999999999999999999972--98743156335785578888740256765456
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCCH-HHHHHHHHHCCCC----C-CCCCHHHHH
Q ss_conf --1244544899999999999982774237998522387269456318993-8999999826889----9-876699999
Q gi|254781166|r 159 --YNCMGPAKAALQSAVRYLAMDLGRQSGIRVNALSAGPAKTLASSGISDF-RYILKWNEYNSPL----G-RNITHDEVA 230 (284)
Q Consensus 159 --~~~Y~asKaai~~ltk~lA~elg~~~gIRVN~I~PG~i~T~~~~~~~~~-~~~~~~~~~~~pl----g-R~g~peeiA 230 (284)
T Consensus 136 ~~~~~Y~~sK~~aE~~~~~~~~~~----gl~~~ilRp~~v~Gp~d~~~~~~~~~i~~~~~~~~p~~~~~g~~~v~V~Dva 211 (328)
T TIGR03466 136 KMIGHYKRSKFLAEEAALRMIAEK----GLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLRGKMPAYVDTGLNLVHVDDVA 211 (328)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHC----CCCEEEECCCCEECCCCCCCCCHHHHHHHHHCCCCCEEECCCCEEEEEHHHH
T ss_conf 665778899999999999999972----9975997778568899888876699999997599976755871899838999
Q ss_pred HHHHHHHCHHHCCCCCCEEEECCC
Q ss_conf 999986098878868868997598
Q gi|254781166|r 231 KSALYLLSDFSSGVTGECHYVDAG 254 (284)
Q Consensus 231 ~av~fL~Sd~s~~iTG~~i~vDGG 254 (284)
T Consensus 212 ~a~~~a~-~~--~~~g~~y~~~~~ 232 (328)
T TIGR03466 212 EGHLLAL-ER--GRIGERYILGGE 232 (328)
T ss_pred HHHHHHH-HC--CCCCCEEEECCC
T ss_conf 9999997-57--998987997999