HHsearch alignment for GI: 254781166 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=91.32 E-value=1.2 Score=24.11 Aligned_cols=121 Identities=14% Similarity=0.134 Sum_probs=66.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 978999488988417999999999889889998489889999999971389--289998889999999999999999847
Q gi|254781166|r 10 DKRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMD--FFMAGHCNVSNSETIDDVFRNLEKEWG 87 (284)
Q Consensus 10 ~K~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~G 87 (284)
T Consensus 88 ~~~ilDlgtGSG-~I~i~la~~~--~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~---------~--~~~ 153 (251)
T TIGR03534 88 PLKVLDLGTGSG-AIALALAKER--PDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEP---------L--PGG 153 (251)
T ss_pred CCEEEEECCCHH-HHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHC---------C--CCC
T ss_conf 986999556716-9999999967--9978999989879999999999980998268651314321---------5--689
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCHHHHH--HHHCCCCCH---HHHHHHHHHHHHCCCCCEEC
Q ss_conf 988999627212742125862135899985--564026402---32234678874101221000
Q gi|254781166|r 88 TIDFLVHAIAFSDKAELTGPYINTTRENFL--NTMDVSVYS---FTALAARASSLMNKGGSMLT 146 (284)
Q Consensus 88 ~iD~lInnag~~~~~~~~~~~~~~~~e~~~--~~~~vnl~~---~~~~~k~~~~~m~~~G~IIn 146 (284)
T Consensus 154 ~fDlIvsNPPYI~~~e~~~--l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~ 215 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHL--LDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLL 215 (251)
T ss_pred CCCEEEECCCCCCHHHHHH--CCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8668997899887456663--2860102672999717984699999999999985367988999