HHsearch alignment for GI: 254781166 and conserved domain: TIGR03589
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=99.64 E-value=2.6e-14 Score=113.19 Aligned_cols=215 Identities=15% Similarity=0.118 Sum_probs=147.7
Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 229978999488988417999999999889--889998489889999999971389289998889999999999999999
Q gi|254781166|r 7 LMKDKRGIVLGVANNRSLAWSIAKMCHAAG--AKVALTWQGDATKKRIEGLVEGMDFFMAGHCNVSNSETIDDVFRNLEK 84 (284)
Q Consensus 7 ~L~~K~~iVtGa~g~~GIG~aiA~~la~~G--a~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (284)
T Consensus 1 ~~~~K~ILVTGGaGf--IGS~lv~~Ll~~~~~~~iii~~~de~~~~~l~~~~-~~~~i~f~~gDIrD~~~l~~~~~---- 73 (324)
T TIGR03589 1 MFNNKSILITGGTGS--FGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF-PAPCLRFFIGDVRDKERLTRALR---- 73 (324)
T ss_pred CCCCCEEEEECCCCH--HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHC----
T ss_conf 999399999079779--99999999997299828999668640328898516-89875999677778899997634----
Q ss_pred HHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHH
Q ss_conf 84798899962721274212586213589998556402640232234678874101221000133323467720124454
Q gi|254781166|r 85 EWGTIDFLVHAIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMNKGGSMLTLTYLGADKVMPHYNCMGP 164 (284)
Q Consensus 85 ~~G~iD~lInnag~~~~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~~~G~IInisS~~~~~~~p~~~~Y~a 164 (284)
T Consensus 74 ---~vD~VfHaAA~khV--------p~se~nP~e~i~tNV~Gt~nlleaa~~~--~Vkk~V~iSTDka~~P---~n~yGa 137 (324)
T TIGR03589 74 ---GVDYVVHAAALKQV--------PAAEYNPFECIRTNINGAQNVIDAAIDN--GVKRVVALSTDKAANP---INLYGA 137 (324)
T ss_pred ---CCCEEEECCCCCCC--------CHHHHCHHHHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCC---CCCCCC
T ss_conf ---88899994627767--------2677698999999979999999998855--5431786226888899---674312
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHC-CCC--------CCCCCHHHHHHHHHH
Q ss_conf 48999999999999827742379985223872694563189938999999826-889--------987669999999998
Q gi|254781166|r 165 AKAALQSAVRYLAMDLGRQSGIRVNALSAGPAKTLASSGISDFRYILKWNEYN-SPL--------GRNITHDEVAKSALY 235 (284)
Q Consensus 165 sKaai~~ltk~lA~elg~~~gIRVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~-~pl--------gR~g~peeiA~av~f 235 (284)
T Consensus 138 sK~~~E~l~~~~~~~~~~-~~~~~~~vRygNV~gsrgS---ViP~F~~qi~~g~~~~~itd~~mtRf~mtv~dav~lV~~ 213 (324)
T TIGR03589 138 TKLASDKLFVAANNISGS-KGTRFSVVRYGNVVGSRGS---VVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLK 213 (324)
T ss_pred CHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCCC---CHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHHH
T ss_conf 367679999999985078-8863788633275188866---399999999839997444999807998889999999999
Q ss_pred HHCHHHCCCCCCEEEE
Q ss_conf 6098878868868997
Q gi|254781166|r 236 LLSDFSSGVTGECHYV 251 (284)
Q Consensus 236 L~Sd~s~~iTG~~i~v 251 (284)
T Consensus 214 a~~~-~--~~GEifv~ 226 (324)
T TIGR03589 214 SLER-M--LGGEIFVP 226 (324)
T ss_pred HHHH-C--CCCEEEEC
T ss_conf 9982-8--89849983