HHsearch alignment for GI: 254781166 and conserved domain: cd01065

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.54  E-value=0.00039  Score=46.79  Aligned_cols=75  Identities=16%  Similarity=0.225  Sum_probs=51.3

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             299789994889884179999999998898-8999848988999999997138928999888999999999999999984
Q gi|254781166|r    8 MKDKRGIVLGVANNRSLAWSIAKMCHAAGA-KVALTWQGDATKKRIEGLVEGMDFFMAGHCNVSNSETIDDVFRNLEKEW   86 (284)
Q Consensus         8 L~~K~~iVtGa~g~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (284)
T Consensus        17 ~~~k~vlIlGaG---Gaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~~----~~~~~~----------~~~~   79 (155)
T cd01065          17 LKGKKVLILGAG---GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIA----IAYLDL----------EELL   79 (155)
T ss_pred             CCCCEEEEECCC---HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCC----EEECCH----------HHHH
T ss_conf             579999998675---89999999999719982288608999999999985013664----010453----------4431


Q ss_pred             CCCCEEEECCCCC
Q ss_conf             7988999627212
Q gi|254781166|r   87 GTIDFLVHAIAFS   99 (284)
Q Consensus        87 G~iD~lInnag~~   99 (284)
T Consensus        80 ~~~dliIN~tp~G   92 (155)
T cd01065          80 AEADLIINTTPVG   92 (155)
T ss_pred             CCCCEEEECCCCC
T ss_conf             5688798767787