HHsearch alignment for GI: 254781166 and conserved domain: cd01065
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.54 E-value=0.00039 Score=46.79 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=51.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 299789994889884179999999998898-8999848988999999997138928999888999999999999999984
Q gi|254781166|r 8 MKDKRGIVLGVANNRSLAWSIAKMCHAAGA-KVALTWQGDATKKRIEGLVEGMDFFMAGHCNVSNSETIDDVFRNLEKEW 86 (284)
Q Consensus 8 L~~K~~iVtGa~g~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (284)
T Consensus 17 ~~~k~vlIlGaG---Gaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~~----~~~~~~----------~~~~ 79 (155)
T cd01065 17 LKGKKVLILGAG---GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIA----IAYLDL----------EELL 79 (155)
T ss_pred CCCCEEEEECCC---HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCC----EEECCH----------HHHH
T ss_conf 579999998675---89999999999719982288608999999999985013664----010453----------4431
Q ss_pred CCCCEEEECCCCC
Q ss_conf 7988999627212
Q gi|254781166|r 87 GTIDFLVHAIAFS 99 (284)
Q Consensus 87 G~iD~lInnag~~ 99 (284)
T Consensus 80 ~~~dliIN~tp~G 92 (155)
T cd01065 80 AEADLIINTTPVG 92 (155)
T ss_pred CCCCEEEECCCCC
T ss_conf 5688798767787