HHsearch alignment for GI: 254781166 and conserved domain: cd05211
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.97 E-value=0.099 Score=31.16 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=30.3
Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE-EECC
Q ss_conf 22997899948898841799999999988988999-8489
Q gi|254781166|r 7 LMKDKRGIVLGVANNRSLAWSIAKMCHAAGAKVAL-TWQG 45 (284)
Q Consensus 7 ~L~~K~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi-~~~~ 45 (284)
T Consensus 20 ~l~g~~vaVqGfGn---VG~~~a~~l~~~GakvvavsD~~ 56 (217)
T cd05211 20 SLEGLTVAVQGLGN---VGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred CCCCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEECCC
T ss_conf 85799999989889---99999999998599899998578