HHsearch alignment for GI: 254781166 and conserved domain: pfam02719
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=99.66 E-value=2.9e-14 Score=112.86 Aligned_cols=218 Identities=16% Similarity=0.093 Sum_probs=152.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9994889884179999999998898-8999848988999999997---13892899988899999999999999998479
Q gi|254781166|r 13 GIVLGVANNRSLAWSIAKMCHAAGA-KVALTWQGDATKKRIEGLV---EGMDFFMAGHCNVSNSETIDDVFRNLEKEWGT 88 (284)
Q Consensus 13 ~iVtGa~g~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 88 (284)
T Consensus 1 ILVTGGaGF--IGS~Lv~~Ll~~g~~~v~v~d~~~~~~~~~~~~l~~~~~~~~~~~~~~DI~D~~~l~~~~~~-----~~ 73 (280)
T pfam02719 1 VLVTGGGGS--IGSELCRQILKFNPKKIILFSRDEFKLYEIEQELREEYNDPKLRFFIGDVRDRERLERAMEE-----YG 73 (280)
T ss_pred EEEECCCCH--HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHH-----CC
T ss_conf 799748867--99999999996899889999088742778999988626789838998116898999999875-----49
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 88999627212742125862135899985564026402322346788741012210001333234677201244544899
Q gi|254781166|r 89 IDFLVHAIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMNKGGSMLTLTYLGADKVMPHYNCMGPAKAA 168 (284)
Q Consensus 89 iD~lInnag~~~~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~~~G~IInisS~~~~~~~p~~~~Y~asKaa 168 (284)
T Consensus 74 ~D~V~HlAA~~~V--------~~s~~~P~~~~~~Nv~gT~nlLe~a~~~~--vk~~v~~STd~a~~P---~s~Yg~sK~~ 140 (280)
T pfam02719 74 VDTVFHAAALKHV--------PLVEYNPMEAIKTNVLGTENVAEAAIENG--VEKFVLISTDKAVNP---TNVMGATKRL 140 (280)
T ss_pred CCEEEECHHHCCC--------CCHHHCHHHHHHHHHHHHHHHHHHHHHCC--CCEEECCCCCCCCCC---CCCCCCCHHH
T ss_conf 9999981031165--------32766999999887277799998888539--624551476644569---9845423777
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHCCCC--------CCCCCHHHHHHHHHHHHCHH
Q ss_conf 9999999999827742379985223872694563189938999999826889--------98766999999999860988
Q gi|254781166|r 169 LQSAVRYLAMDLGRQSGIRVNALSAGPAKTLASSGISDFRYILKWNEYNSPL--------GRNITHDEVAKSALYLLSDF 240 (284)
Q Consensus 169 i~~ltk~lA~elg~~~gIRVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl--------gR~g~peeiA~av~fL~Sd~ 240 (284)
T Consensus 141 ~E~l~~~y~~~~~~~-~~~~~~lR~fNVyGprgs---VIp~Fi~~~~~~~pi~I~dg~qtRdf~~V~D~v~~~l~a~~~- 215 (280)
T pfam02719 141 AEKLFQAANRESGSG-KTRFSAVRFGNVLGSRGS---VIPLFKKQIAEGGPVTVTHPDMTRFFMTIPEAVQLVLQAGAM- 215 (280)
T ss_pred HHHHHHHHHHHHCCC-CCEEEEEEECCEECCCCC---CHHHHHHHHHCCCCEEECCCCCEEEEEEHHHHHHHHHHHHHH-
T ss_conf 899999999971999-854898754450289977---099999999859986565998438558799999999999972-
Q ss_pred HCCCCCCEEEECCCCCE
Q ss_conf 78868868997598661
Q gi|254781166|r 241 SSGVTGECHYVDAGYHI 257 (284)
Q Consensus 241 s~~iTG~~i~vDGG~s~ 257 (284)
T Consensus 216 ~--~~geifnig~g~~~ 230 (280)
T pfam02719 216 G--KGGEIFVLDMGEPV 230 (280)
T ss_pred C--CCCCEEECCCCCCE
T ss_conf 8--77867888899866