HHsearch alignment for GI: 254781167 and conserved domain: CHL00200
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional.
Probab=97.25 E-value=0.014 Score=38.73 Aligned_cols=168 Identities=19% Similarity=0.242 Sum_probs=95.9
Q ss_pred CCCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHHH----HHHHHHHHHHHH--HHHHHHHHHHHHHCCCCEE
Q ss_conf 7846999826998--9999988753104537774425641367----766688999985--5899999999985027906
Q gi|254781167|r 47 EKPLALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSAR----VHEGSFGACLML--NPDIVGDCIAAMCKALSIP 118 (322)
Q Consensus 47 e~p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~~----v~~~g~GaaLl~--~p~~~~~iv~~~~~~~~~p 118 (322)
T Consensus 14 ~~ali~y~taG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~v~~~r~~~~~P 93 (263)
T CHL00200 14 QCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 96168887073898789999999999769999997898888666589999999999977987778999999986067998
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH--------
Q ss_conf 999861134566532201455432000122012100-------------------------------13566--------
Q gi|254781167|r 119 VTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI-------- 159 (322)
Q Consensus 119 vsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~-------- 159 (322)
T Consensus 94 ivlMt---Y~N~i~~yG~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~GF 170 (263)
T CHL00200 94 IVIFT---YYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGC 170 (263)
T ss_pred EEEEE---EHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 89986---206888738899999999849986874799978889999999855862166647899699999999728980
Q ss_pred -----HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCC
Q ss_conf -----4025774212276610467876667388753025777789989888742-03523441220
Q gi|254781167|r 160 -----LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAA 219 (322)
Q Consensus 160 -----~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga 219 (322)
T Consensus 171 iY~vs~~GvTG~~~~~-~~~l~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSai 234 (263)
T CHL00200 171 IYLVSTTGVTGLKTEL-DKKLKKLIETIKKM-TNKPIILGFGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred EEEEECCCCCCCCCCC-HHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 8985336556875445-18799999999973-6998487358799999999974599999987899