HHsearch alignment for GI: 254781167 and conserved domain: PRK10415

>PRK10415 tRNA-dihydrouridine synthase B; Provisional.
Probab=100.00  E-value=0  Score=608.82  Aligned_cols=300  Identities=20%  Similarity=0.322  Sum_probs=267.1

Q ss_pred             CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHH--HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf             97786078999999828982998170332477608978983--0274578469998269989999988753104537774
Q gi|254781167|r    1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNIL--GFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEIN   78 (322)
Q Consensus         1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~--~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~id   78 (322)
T Consensus        17 Magvtd~~FR~l~~~~Ga~-l~~TEmv~a~~~~~~~~~~~~~~~~~~~~~~~~vQl~G~dp~~~a~Aa~~~~~~g~~~ID   95 (321)
T PRK10415         17 MAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHVDEPGIRTVQIAGSDPKEMADAARINVESGAQIID   95 (321)
T ss_pred             CCCCCCHHHHHHHHHHCCC-EEEECCEEECHHHHCCHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             7899489999999998839-999875871277733848898630467889805997269999999999988764999894


Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             42564136776668899998558999999999850279069998611345665322014554320001220121001356
Q gi|254781167|r   79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA  158 (322)
Q Consensus        79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~  158 (322)
T Consensus        96 iN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a~~iPVTvKiRlG~~~~--~~~~~~~~~~~e~aG~~~itvHgRT-  172 (321)
T PRK10415         96 INMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPE--HRNCEEIAQLAEDCGIQALTIHGRT-  172 (321)
T ss_pred             EECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC--HHHHHHHHHHHHHCCCCEEEEEHHH-
T ss_conf             3189998997079836506339899999999997344874699984688852--2439999999985698899997221-


Q ss_pred             HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             6402577421227661046787666738875302577778998988874--20352344122000124399999987199
Q gi|254781167|r  159 ILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSAMLTTVDEYFSNP  236 (322)
Q Consensus       159 ~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~if~~I~~~l~~~  236 (322)
T Consensus       173 -------~~q~y~g~adw~~i~~vk~~~-~iPvi~NGDI~~~~da~~~l~~tg~dgvMigRgal~nPwiF~~i~~~l~~g  244 (321)
T PRK10415        173 -------RACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG  244 (321)
T ss_pred             -------HHHHHCCCCCHHHHHHHHHCC-CCCEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHHHHHHHHHHHCC
T ss_conf             -------344316998779999998547-997896589199999999998629999997566536987799999998169


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             88889998899999999999999999999852287679989989998738999899999998621781106999999999
Q gi|254781167|r  237 LTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVEAGASTATHHIIETAFN  316 (322)
Q Consensus       237 ~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~Ls~~~~~~~~~~~iie~~~~  316 (322)
T Consensus       245 ~~~~~~~~~e~~~-----~~~~h~~~~~~~~g~~~~~~~~Rkh~~~Y~kg~~g~~~~R~~~~-~~~~~~ev~~~l~~~~e  318 (321)
T PRK10415        245 ELLPPLPLAEVKR-----LLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN-AIEDASEQLEALEAYFE  318 (321)
T ss_pred             CCCCCCCHHHHHH-----HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-CCCCHHHHHHHHHHHHH
T ss_conf             9799969999999-----99999999999869075699999789999588987699999997-48999999999999998


Q ss_pred             HH
Q ss_conf             86
Q gi|254781167|r  317 LM  318 (322)
Q Consensus       317 ~l  318 (322)
T Consensus       319 ~~  320 (321)
T PRK10415        319 NF  320 (321)
T ss_pred             HC
T ss_conf             43