HHsearch alignment for GI: 254781167 and conserved domain: PRK10415
>PRK10415 tRNA-dihydrouridine synthase B; Provisional.
Probab=100.00 E-value=0 Score=608.82 Aligned_cols=300 Identities=20% Similarity=0.322 Sum_probs=267.1
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHH--HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 97786078999999828982998170332477608978983--0274578469998269989999988753104537774
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNIL--GFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEIN 78 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~--~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~id 78 (322)
T Consensus 17 Magvtd~~FR~l~~~~Ga~-l~~TEmv~a~~~~~~~~~~~~~~~~~~~~~~~~vQl~G~dp~~~a~Aa~~~~~~g~~~ID 95 (321)
T PRK10415 17 MAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHVDEPGIRTVQIAGSDPKEMADAARINVESGAQIID 95 (321)
T ss_pred CCCCCCHHHHHHHHHHCCC-EEEECCEEECHHHHCCHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 7899489999999998839-999875871277733848898630467889805997269999999999988764999894
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 42564136776668899998558999999999850279069998611345665322014554320001220121001356
Q gi|254781167|r 79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA 158 (322)
Q Consensus 79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~ 158 (322)
T Consensus 96 iN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a~~iPVTvKiRlG~~~~--~~~~~~~~~~~e~aG~~~itvHgRT- 172 (321)
T PRK10415 96 INMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPE--HRNCEEIAQLAEDCGIQALTIHGRT- 172 (321)
T ss_pred EECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC--HHHHHHHHHHHHHCCCCEEEEEHHH-
T ss_conf 3189998997079836506339899999999997344874699984688852--2439999999985698899997221-
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 6402577421227661046787666738875302577778998988874--20352344122000124399999987199
Q gi|254781167|r 159 ILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 159 ~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~if~~I~~~l~~~ 236 (322)
T Consensus 173 -------~~q~y~g~adw~~i~~vk~~~-~iPvi~NGDI~~~~da~~~l~~tg~dgvMigRgal~nPwiF~~i~~~l~~g 244 (321)
T PRK10415 173 -------RACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 (321)
T ss_pred -------HHHHHCCCCCHHHHHHHHHCC-CCCEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHHHHHHHHHHHCC
T ss_conf -------344316998779999998547-997896589199999999998629999997566536987799999998169
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 88889998899999999999999999999852287679989989998738999899999998621781106999999999
Q gi|254781167|r 237 LTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVEAGASTATHHIIETAFN 316 (322)
Q Consensus 237 ~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~Ls~~~~~~~~~~~iie~~~~ 316 (322)
T Consensus 245 ~~~~~~~~~e~~~-----~~~~h~~~~~~~~g~~~~~~~~Rkh~~~Y~kg~~g~~~~R~~~~-~~~~~~ev~~~l~~~~e 318 (321)
T PRK10415 245 ELLPPLPLAEVKR-----LLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN-AIEDASEQLEALEAYFE 318 (321)
T ss_pred CCCCCCCHHHHHH-----HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-CCCCHHHHHHHHHHHHH
T ss_conf 9799969999999-----99999999999869075699999789999588987699999997-48999999999999998
Q ss_pred HH
Q ss_conf 86
Q gi|254781167|r 317 LM 318 (322)
Q Consensus 317 ~l 318 (322)
T Consensus 319 ~~ 320 (321)
T PRK10415 319 NF 320 (321)
T ss_pred HC
T ss_conf 43