HHsearch alignment for GI: 254781167 and conserved domain: PRK10550

>PRK10550 tRNA-dihydrouridine synthase C; Provisional.
Probab=100.00  E-value=0  Score=538.53  Aligned_cols=290  Identities=22%  Similarity=0.263  Sum_probs=239.9

Q ss_pred             CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHH--HH------HHCCCCCCCEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf             97786078999999828982998170332477608978--98------30274578469998269989999988753104
Q gi|254781167|r    1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKK--NI------LGFSTQEKPLALQIGGADISKLVEAAKIVEDF   72 (322)
Q Consensus         1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~--~~------~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~   72 (322)
T Consensus         8 MaGvTd~~fR~l~~~~g~~dl~~TEfv~v~~~~~~~k~~~r~~~el~~~~~~~~~~Pv~vQl~G~dpe~~a~aA~~~~e~   87 (312)
T PRK10550          8 MEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELHNASRTPSGTLVRIQLLGQYPQWLAENAARAVEL   87 (312)
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC
T ss_conf             78887799999999968998899661235767741167876276765123587788368884278889999999999976


Q ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCH
Q ss_conf             5377744256413677666889999855899999999985027--90699986113456653220145543200012201
Q gi|254781167|r   73 GYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL--SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNG  150 (322)
Q Consensus        73 g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~--~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~  150 (322)
T Consensus        88 g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v~~~iPVtvK~RlG~~~~~---~~~e~~~~~~~~G~~~  164 (312)
T PRK10550         88 GSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGD---RKFEIADAVQQAGATE  164 (312)
T ss_pred             CCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC---HHHHHHHHHHHCCCCE
T ss_conf             9996625479997896689926853289779999999999745878995477535899863---1999999999739987


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHHHHH
Q ss_conf             210013566402577421227661-046787666738875302577778998988874--20352344122000124399
Q gi|254781167|r  151 IWIHARKAILKGLSPKDNRKIPNL-DYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSAMLT  227 (322)
Q Consensus       151 itiH~Rt~~~~g~s~~~~~~~~~~-~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~if~  227 (322)
T Consensus       165 ltvH~RT--------~~q~y~~~~~dw~~i~~~~~~~-~iPvi~NGdI~s~~d~~~~~~~tg~dgvMiGRgal~nP~l~~  235 (312)
T PRK10550        165 LVVHGRT--------KEQGYRAEHIDWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR  235 (312)
T ss_pred             EEEECCC--------HHHCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHHH
T ss_conf             9990552--------6535899834899999999748-998997079599999999987148999996585530977999


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH
Q ss_conf             99998719988889998899999999999999999999852287679989989998738999899999998621781106
Q gi|254781167|r  228 TVDEYFSNPLTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVEAGASTAT  307 (322)
Q Consensus       228 ~I~~~l~~~~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~Ls~~~~~~~~~  307 (322)
T Consensus       236 ~i~~---~~--~~~~~-~~~~-----~~~~~~~~l~~~~~~~~~~~~rmKk~~~~~~~~~p~a~~lr~~i~-~~~~~~e~  303 (312)
T PRK10550        236 VVKY---NE--PRMPW-PEVV-----ALLQKYTRLEKQGDTGLYHVARIKQWLGYLRKEYDEATELFQEIR-ALNNSPDI  303 (312)
T ss_pred             HHHC---CC--CCCCH-HHHH-----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HCCCHHHH
T ss_conf             8613---79--99998-9999-----999999999863310366899999999999860996999999998-43999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254781167|r  308 HHIIETA  314 (322)
Q Consensus       308 ~~iie~~  314 (322)
T Consensus       304 ~~~l~~l  310 (312)
T PRK10550        304 ARAIQAI  310 (312)
T ss_pred             HHHHHHH
T ss_conf             9999863