HHsearch alignment for GI: 254781167 and conserved domain: PRK10550
>PRK10550 tRNA-dihydrouridine synthase C; Provisional.
Probab=100.00 E-value=0 Score=538.53 Aligned_cols=290 Identities=22% Similarity=0.263 Sum_probs=239.9
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHH--HH------HHCCCCCCCEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 97786078999999828982998170332477608978--98------30274578469998269989999988753104
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKK--NI------LGFSTQEKPLALQIGGADISKLVEAAKIVEDF 72 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~--~~------~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~ 72 (322)
T Consensus 8 MaGvTd~~fR~l~~~~g~~dl~~TEfv~v~~~~~~~k~~~r~~~el~~~~~~~~~~Pv~vQl~G~dpe~~a~aA~~~~e~ 87 (312)
T PRK10550 8 MEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELHNASRTPSGTLVRIQLLGQYPQWLAENAARAVEL 87 (312)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 78887799999999968998899661235767741167876276765123587788368884278889999999999976
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCH
Q ss_conf 5377744256413677666889999855899999999985027--90699986113456653220145543200012201
Q gi|254781167|r 73 GYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL--SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNG 150 (322)
Q Consensus 73 g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~--~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~ 150 (322)
T Consensus 88 g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v~~~iPVtvK~RlG~~~~~---~~~e~~~~~~~~G~~~ 164 (312)
T PRK10550 88 GSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGD---RKFEIADAVQQAGATE 164 (312)
T ss_pred CCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC---HHHHHHHHHHHCCCCE
T ss_conf 9996625479997896689926853289779999999999745878995477535899863---1999999999739987
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHHHHH
Q ss_conf 210013566402577421227661-046787666738875302577778998988874--20352344122000124399
Q gi|254781167|r 151 IWIHARKAILKGLSPKDNRKIPNL-DYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 151 itiH~Rt~~~~g~s~~~~~~~~~~-~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~if~ 227 (322)
T Consensus 165 ltvH~RT--------~~q~y~~~~~dw~~i~~~~~~~-~iPvi~NGdI~s~~d~~~~~~~tg~dgvMiGRgal~nP~l~~ 235 (312)
T PRK10550 165 LVVHGRT--------KEQGYRAEHIDWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 (312)
T ss_pred EEEECCC--------HHHCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHHH
T ss_conf 9990552--------6535899834899999999748-998997079599999999987148999996585530977999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH
Q ss_conf 99998719988889998899999999999999999999852287679989989998738999899999998621781106
Q gi|254781167|r 228 TVDEYFSNPLTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVEAGASTAT 307 (322)
Q Consensus 228 ~I~~~l~~~~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~Ls~~~~~~~~~ 307 (322)
T Consensus 236 ~i~~---~~--~~~~~-~~~~-----~~~~~~~~l~~~~~~~~~~~~rmKk~~~~~~~~~p~a~~lr~~i~-~~~~~~e~ 303 (312)
T PRK10550 236 VVKY---NE--PRMPW-PEVV-----ALLQKYTRLEKQGDTGLYHVARIKQWLGYLRKEYDEATELFQEIR-ALNNSPDI 303 (312)
T ss_pred HHHC---CC--CCCCH-HHHH-----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HCCCHHHH
T ss_conf 8613---79--99998-9999-----999999999863310366899999999999860996999999998-43999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781167|r 308 HHIIETA 314 (322)
Q Consensus 308 ~~iie~~ 314 (322)
T Consensus 304 ~~~l~~l 310 (312)
T PRK10550 304 ARAIQAI 310 (312)
T ss_pred HHHHHHH
T ss_conf 9999863