HHsearch alignment for GI: 254781167 and conserved domain: PRK11815
>PRK11815 tRNA-dihydrouridine synthase A; Provisional.
Probab=100.00 E-value=0 Score=679.89 Aligned_cols=312 Identities=51% Similarity=0.881 Sum_probs=296.1
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 97786078999999828982998170332477608978983027457846999826998999998875310453777442
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLN 80 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN 80 (322)
T Consensus 18 M~gvTD~~fR~l~R~~~~~~l~yTEMvsa~al~~~~~~~~l~~~~~E~Pv~vQl~G~dp~~la~Aa~i~~~~g~d~IDlN 97 (333)
T PRK11815 18 MMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLN 97 (333)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCEEEHHHHCCCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEECCC
T ss_conf 79980799999999977997798699851466617988885069877987999747999999999999987398853523
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 56413677666889999855899999999985027906999861134566532201455432000122012100135664
Q gi|254781167|r 81 VGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAIL 160 (322)
Q Consensus 81 ~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~ 160 (322)
T Consensus 98 ~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a~~~PVTvK~RlG~d~~d~~~~l~~f~~~~~~aG~~~i~vH~R~a~l 177 (333)
T PRK11815 98 VGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDRFIVHARKAWL 177 (333)
T ss_pred CCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHH
T ss_conf 89986887327801787079999999999998734885357863167777528999999999997599889996027877
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 02577421227661046787666738875302577778998988874203523441220001243999999871998888
Q gi|254781167|r 161 KGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLTGS 240 (322)
Q Consensus 161 ~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga~~~P~if~~I~~~l~~~~~~~ 240 (322)
T Consensus 178 ~Glspk~nR~ippl~~~~v~~lk~~~p~ipvi~NGdI~s~~~~~~~l~~~DGVMiGRga~~nPwif~~id~~~~g~~~-~ 256 (333)
T PRK11815 178 KGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGVMIGRAAYHNPYLLAEVDRELFGEPA-P 256 (333)
T ss_pred CCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHCCCC-C
T ss_conf 267877750587304899999997667871884599699999999985599621148675599789999999848999-9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99988999999999999999999998522876799899899987389998999999986217811069999999998652
Q gi|254781167|r 241 SPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVEAGASTATHHIIETAFNLMIE 320 (322)
Q Consensus 241 ~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~Ls~~~~~~~~~~~iie~~~~~l~E 320 (322)
T Consensus 257 ~~s~--------~ei~~~~~~y~~~~~~~g~~~~~~~rHl~~~~~G~pGak~~R~~Lse~~~~~~~~~~~l~~a~~~~~~ 328 (333)
T PRK11815 257 VPSR--------EEVLEAMLPYIEAHLAQGGRLNHITRHMLGLFQGLPGARRWRRYLSENAHKPGAGIEVLEEALALVEE 328 (333)
T ss_pred CCCH--------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999--------99999999999999984998899999999986499878999999714176899969999999986457
Q ss_pred C
Q ss_conf 1
Q gi|254781167|r 321 S 321 (322)
Q Consensus 321 ~ 321 (322)
T Consensus 329 ~ 329 (333)
T PRK11815 329 A 329 (333)
T ss_pred H
T ss_conf 4