HHsearch alignment for GI: 254781167 and conserved domain: TIGR01036
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=97.88 E-value=9.8e-05 Score=54.72 Aligned_cols=158 Identities=22% Similarity=0.272 Sum_probs=116.2
Q ss_pred HHCCCCCCCEEEEEECCCH-------HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3027457846999826998-------999998875310453777442564136776668899998558999999999850
Q gi|254781167|r 41 LGFSTQEKPLALQIGGADI-------SKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCK 113 (322)
Q Consensus 41 ~~~~~~e~p~~~Ql~g~~p-------~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~ 113 (322)
T Consensus 138 akla~y~~piGiNiGKNK~t~~~~a~~DY~~~~~~~~~~-A~Y~~vN~SSP------NTPgLR~LQ~~~~~~~LL~~~k~ 210 (370)
T TIGR01036 138 AKLARYKGPIGINIGKNKKTPAEDAKEDYKACLRKVGPL-ADYLVVNVSSP------NTPGLRDLQYKESLRDLLTAVKE 210 (370)
T ss_pred HCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECCCC------CCCCHHHHCCHHHHHHHHHHHHH
T ss_conf 202789852643248886665442266899999987321-07078863588------97351324014358999999999
Q ss_pred CCC---------EEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHH-----------HHHHHH---HHHCCCCCCCCC
Q ss_conf 279---------069998611345665322014554320001220121-----------001356---640257742122
Q gi|254781167|r 114 ALS---------IPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIW-----------IHARKA---ILKGLSPKDNRK 170 (322)
Q Consensus 114 ~~~---------~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~it-----------iH~Rt~---~~~g~s~~~~~~ 170 (322)
T Consensus 211 ~~~~L~~~~~KY~P~~VKIAP---DL-~~~dl~~IAd~~v~~~~dG~IATNTT~sR~~Gv~g~k~~r~~~GGLSGkPL~~ 286 (370)
T TIGR01036 211 ETDGLRRVHRKYVPVLVKIAP---DL-SESDLLDIADSAVELGIDGIIATNTTVSRDLGVTGPKNSREETGGLSGKPLQK 286 (370)
T ss_pred HHHHHHHHHCCCCCEEEEECC---CC-CHHHHHHHHHHHHHCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 999999861278857897268---98-82138999999987189848984451025200256321435678988751447
Q ss_pred CCCCHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHH-CCCC
Q ss_conf 766104678766673887-53025777789989888742-0352
Q gi|254781167|r 171 IPNLDYDIVYEIKKENPD-LFIGLNGGLEDMSQALKILP-SVDG 212 (322)
Q Consensus 171 ~~~~~~~~i~~l~~~~~~-~~i~~NGdi~~~~~a~~~l~-~~dg 212 (322)
T Consensus 287 ---kS~eiirrL~~~~~gr~piIgVGGI~~~~~A~EkI~AGASL 327 (370)
T TIGR01036 287 ---KSTEIIRRLYKELKGRLPIIGVGGISSAQNALEKIKAGASL 327 (370)
T ss_pred ---HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCHH
T ss_conf ---78999999999964957899627857478899999847124