HHsearch alignment for GI: 254781167 and conserved domain: TIGR01949
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210 This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=92.80 E-value=0.61 Score=26.76 Aligned_cols=144 Identities=17% Similarity=0.292 Sum_probs=98.3
Q ss_pred CCEEEEEECCCH-------HHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCC
Q ss_conf 846999826998-------99999887531045377--7442564136776668899998558999999--999850279
Q gi|254781167|r 48 KPLALQIGGADI-------SKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDC--IAAMCKALS 116 (322)
Q Consensus 48 ~p~~~Ql~g~~p-------~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~i--v~~~~~~~~ 116 (322)
T Consensus 71 ~GlIvHLsAST~L~P~p~~K~~~~tVE~Ai~~GADAVS~HvNvGs~--------------~e~d~~~~lg~vA~~ad~~G 136 (259)
T TIGR01949 71 AGLIVHLSASTSLSPDPNDKRIVTTVEDAIRLGADAVSIHVNVGSD--------------TEADQIEDLGDVAEIADDWG 136 (259)
T ss_pred EEEEEECCCCCCCCCCCCCCEEEECHHHHHHCCCCEEEEEEECCCC--------------CCHHHHHHHHHHHHHHHHCC
T ss_conf 6999860454325888878757851489973289867998864898--------------73899999989999886548
Q ss_pred EEEEEEE--E-CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 0699986--1-134566532201455432000122012100135664025774212276610467876667388753025
Q gi|254781167|r 117 IPVTVKC--R-IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGL 193 (322)
Q Consensus 117 ~pvsvK~--R-lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~ 193 (322)
T Consensus 137 vPlLAMmYaRG~~i~~e~d~~~v~HAaRlg~ElGADvvK~---------------~Y~Gd--~~SF~~VV~~c~~PVvvA 199 (259)
T TIGR01949 137 VPLLAMMYARGPRIDDEVDPEVVAHAARLGEELGADVVKV---------------PYTGD--IDSFEEVVKACAVPVVVA 199 (259)
T ss_pred CCHHECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE---------------CCCCC--HHHHHHHHCCCCCCEEEE
T ss_conf 8420112788688766447678888876535345776651---------------43177--467999962178777873
Q ss_pred CCCC-CCHHHHHHHH-----HCCCCEEEECCCCCH
Q ss_conf 7777-8998988874-----203523441220001
Q gi|254781167|r 194 NGGL-EDMSQALKIL-----PSVDGVMIGRAAYKN 222 (322)
Q Consensus 194 NGdi-~~~~~a~~~l-----~~~dgvMigRga~~~ 222 (322)
T Consensus 200 GG~k~~s~~efLq~v~DA~~aGAAGvs~GRnvFqh 234 (259)
T TIGR01949 200 GGPKLASDREFLQMVKDAMEAGAAGVSVGRNVFQH 234 (259)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCC
T ss_conf 77798874677788999998187823105630146