HHsearch alignment for GI: 254781167 and conserved domain: TIGR03128
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.34 E-value=0.26 Score=29.43 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=81.6
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 78469998269989999988753104537774425641367766688999985589999999998502790699986113
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIG 126 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG 126 (322)
T Consensus 52 ~~~I~~DlK~~D~--g~~~~~~~~~~Gad~itVh~~~~----------------~~ti~~a~~~a~~-~~~~v~vdl-~~ 111 (206)
T TIGR03128 52 DRKVLADLKTMDA--GEYEAEQAFAAGADIVTVLGVAD----------------DATIKGAVKAAKK-HGKEVQVDL-IN 111 (206)
T ss_pred CCEEEEEEEECCC--HHHHHHHHHHCCCCEEEEECCCC----------------HHHHHHHHHHHHH-CCCEEEEEE-CC
T ss_conf 9979999504474--38999999972898999943489----------------7999999999997-399799997-47
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHH
Q ss_conf 456653220145543200012201210013566402577421227661046787666738875302577778--998988
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLE--DMSQAL 204 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~--~~~~a~ 204 (322)
T Consensus 112 ------~~~~~~~a~~~~~~g~d~v~~h~g~d---------~~~~~~~~~~~~~~~~~~~~~~~i~v~gGi~~~t~~~ai 176 (206)
T TIGR03128 112 ------VKDKVKRAKELKELGADYIGVHTGLD---------EQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVI 176 (206)
T ss_pred ------CCCHHHHHHHHHHCCCCEEEEECCCC---------HHHCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHH
T ss_conf ------89889999999975898899502500---------443267988999999862578736367986835699998
Q ss_pred HHHHCCCCEEEECCCCCHHH
Q ss_conf 87420352344122000124
Q gi|254781167|r 205 KILPSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 205 ~~l~~~dgvMigRga~~~P~ 224 (322)
T Consensus 177 ~--~Gad~vVVGR~It~A~d 194 (206)
T TIGR03128 177 K--LGPDIVIVGGAITKAAD 194 (206)
T ss_pred H--CCCCEEEECCCCCCCCC
T ss_conf 6--69999998961247999