HHsearch alignment for GI: 254781167 and conserved domain: cd00405
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=92.78 E-value=0.88 Score=25.56 Aligned_cols=178 Identities=16% Similarity=0.206 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHCCCEEEECCCCCCH----HHHCCCHHHHHHCCCCCCCEEEEEECC-CHHHHHHHHHHHHCCCCCEE
Q ss_conf 7860789999998289829981703324----776089789830274578469998269-98999998875310453777
Q gi|254781167|r 3 DWTDRHYRFFARLLTNNALLYTEMIVAD----AILRGDKKNILGFSTQEKPLALQIGGA-DISKLVEAAKIVEDFGYNEI 77 (322)
Q Consensus 3 g~Td~~fR~l~r~~~~~~~~~TEmi~a~----~l~~~~~~~~~~~~~~e~p~~~Ql~g~-~p~~~~~aa~~~~~~g~~~i 77 (322)
T Consensus 5 Git~~~d~~~~~~~g~d~-i--Gfif~~~SpR~i~~~~a~~l~~~~~~~-~~~V~Vfvn~~~~~i~---~~~~~~~~d~v 77 (203)
T cd00405 5 GITTLEDALAAAEAGADA-I--GFIFAPKSPRYVSPEQAREIVAALPPF-VKRVGVFVNEDLEEIL---EIAEELGLDVV 77 (203)
T ss_pred CCCCHHHHHHHHHCCCCE-E--EEECCCCCCCEECHHHHHHHHHHCCCC-CEEEEEEECCCHHHHH---HHHHHCCCCEE
T ss_conf 889599999998579998-9--885569989711899999999736998-5399999168399999---99987699889
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 44256413677666889999855899999999985027906999861134566532201455432000122012100135
Q gi|254781167|r 78 NLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARK 157 (322)
Q Consensus 78 dlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt 157 (322)
T Consensus 78 QlHG~e----------------~~~~----~~~lk~~~~~~iikai~v~~~~-----~-~~~~~~~-~~~~d~~L~Ds~~ 130 (203)
T cd00405 78 QLHGDE----------------SPEY----CAQLRARLGLPVIKAIRVKDEE-----D-LEKAAAY-AGEVDAILLDSKS 130 (203)
T ss_pred EECCCC----------------CHHH----HHHHHHHCCCEEEEEECCCCHH-----H-HHHHHHH-CCCCCEEEEECCC
T ss_conf 987899----------------9799----9998750596499996149777-----7-9999874-3777589996888
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHH
Q ss_conf 66402577421227661046787666738875302577778998988874--20352344122000124
Q gi|254781167|r 158 AILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 158 ~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~ 224 (322)
T Consensus 131 ~~~~GGtG~------~fdw~~l~~~~---~~~p~~LAGGl~-~~NV~~ai~~~~p~gvDvsSgvE~~pG 189 (203)
T cd00405 131 GGGGGGTGK------TFDWSLLRGLA---SRKPVILAGGLT-PDNVAEAIRLVRPYGVDVSSGVETSPG 189 (203)
T ss_pred CCCCCCCCC------EECHHHHHHCC---CCCCEEEECCCC-HHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 876887765------33889986212---479879977889-889999998509989997670157899