HHsearch alignment for GI: 254781167 and conserved domain: cd02809
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.17 E-value=0.016 Score=38.49 Aligned_cols=88 Identities=16% Similarity=0.249 Sum_probs=61.7
Q ss_pred CCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 27906999861134566532201455432000122012100135664025774212276610467876667388753025
Q gi|254781167|r 114 ALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGL 193 (322)
Q Consensus 114 ~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~ 193 (322)
T Consensus 113 ~~~~~~wfQLY~----~~d~~~~~~li~rA~~aG~~al~lTvD~p~~---g---~R----~~w~~i~~l~~~~-~~p~i~ 177 (299)
T cd02809 113 AAPGPRWFQLYV----PRDREITEDLLRRAEAAGYKALVLTVDTPVL---G---RR----LTWDDLAWLRSQW-KGPLIL 177 (299)
T ss_pred HCCCCEEEEEEC----CCCHHHHHHHHHHHHHCCCCEEEEECCCCCC---C---CC----CCHHHHHHHHHHC-CCCEEE
T ss_conf 448984677643----6999999999999998599989997058987---8---87----9999999999866-998799
Q ss_pred CCCCCCHHHHHHHHH-CCCCEEEEC
Q ss_conf 777789989888742-035234412
Q gi|254781167|r 194 NGGLEDMSQALKILP-SVDGVMIGR 217 (322)
Q Consensus 194 NGdi~~~~~a~~~l~-~~dgvMigR 217 (322)
T Consensus 178 K-Gi~~~~DA~~a~~~G~dgI~VSN 201 (299)
T cd02809 178 K-GILTPEDALRAVDAGADGIVVSN 201 (299)
T ss_pred E-CCCCHHHHHHHHHCCCCEEEECC
T ss_conf 7-27889999999985998899728