HHsearch alignment for GI: 254781167 and conserved domain: cd02809

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.17  E-value=0.016  Score=38.49  Aligned_cols=88  Identities=16%  Similarity=0.249  Sum_probs=61.7

Q ss_pred             CCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             27906999861134566532201455432000122012100135664025774212276610467876667388753025
Q gi|254781167|r  114 ALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGL  193 (322)
Q Consensus       114 ~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~  193 (322)
T Consensus       113 ~~~~~~wfQLY~----~~d~~~~~~li~rA~~aG~~al~lTvD~p~~---g---~R----~~w~~i~~l~~~~-~~p~i~  177 (299)
T cd02809         113 AAPGPRWFQLYV----PRDREITEDLLRRAEAAGYKALVLTVDTPVL---G---RR----LTWDDLAWLRSQW-KGPLIL  177 (299)
T ss_pred             HCCCCEEEEEEC----CCCHHHHHHHHHHHHHCCCCEEEEECCCCCC---C---CC----CCHHHHHHHHHHC-CCCEEE
T ss_conf             448984677643----6999999999999998599989997058987---8---87----9999999999866-998799


Q ss_pred             CCCCCCHHHHHHHHH-CCCCEEEEC
Q ss_conf             777789989888742-035234412
Q gi|254781167|r  194 NGGLEDMSQALKILP-SVDGVMIGR  217 (322)
Q Consensus       194 NGdi~~~~~a~~~l~-~~dgvMigR  217 (322)
T Consensus       178 K-Gi~~~~DA~~a~~~G~dgI~VSN  201 (299)
T cd02809         178 K-GILTPEDALRAVDAGADGIVVSN  201 (299)
T ss_pred             E-CCCCHHHHHHHHHCCCCEEEECC
T ss_conf             7-27889999999985998899728