HHsearch alignment for GI: 254781167 and conserved domain: cd02811
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=97.88 E-value=4.7e-05 Score=57.10 Aligned_cols=152 Identities=22% Similarity=0.245 Sum_probs=89.1
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
Q ss_conf 98269989999988753104537774425641367766688999985589999999998502790699986113456653
Q gi|254781167|r 53 QIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIP 132 (322)
Q Consensus 53 Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~ 132 (322)
T Consensus 123 ~l~~~~~~~~~~ai~~l~Ad-aL~iHlN~--~QE~~~peGD-----r~f~~~~~~I~~l~~~~~vPVIvKe-VG~Gi--- 190 (326)
T cd02811 123 QLNGYGVEEARRAVEMIEAD-ALAIHLNP--LQEAVQPEGD-----RDFRGWLERIEELVKALSVPVIVKE-VGFGI--- 190 (326)
T ss_pred HHCCCCHHHHHHHHHHCCCC-EEEEECCH--HHHCCCCCCC-----CCHHHHHHHHHHHHHHCCCCEEEEE-CCCCC---
T ss_conf 30456899999999855788-57864460--6540078989-----8777899999999984799858852-47899---
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHH--HHHHHCCCCCCCCCCCC------CHH-----HHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 220145543200012201210013--56640257742122766------104-----67876667388753025777789
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHAR--KAILKGLSPKDNRKIPN------LDY-----DIVYEIKKENPDLFIGLNGGLED 199 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~R--t~~~~g~s~~~~~~~~~------~~~-----~~i~~l~~~~~~~~i~~NGdi~~ 199 (322)
T Consensus 191 ---s~eda~~l~~~Gv~~IdVSghGGTnf~~IE~~R~-~d~~~~~~~~l~dwGi~T~~sL~e~~~~~~~~~iiasGGir~ 266 (326)
T cd02811 191 ---SRETAKRLADAGVKAIDVAGAGGTSWARVENYRA-KDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRN 266 (326)
T ss_pred ---CHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCC-CCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf ---9999999996799999978999975366531015-673133788988628556999999997389981998688787
Q ss_pred HHHHHHHHH-CCCCEEEECCCC
Q ss_conf 989888742-035234412200
Q gi|254781167|r 200 MSQALKILP-SVDGVMIGRAAY 220 (322)
Q Consensus 200 ~~~a~~~l~-~~dgvMigRga~ 220 (322)
T Consensus 267 g~Dv~KalaLGA~~vgiar~~L 288 (326)
T cd02811 267 GLDIAKALALGADLVGMAGPFL 288 (326)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
T ss_conf 7999999995553365279999