HHsearch alignment for GI: 254781167 and conserved domain: cd02922

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=94.31  E-value=0.16  Score=31.03  Aligned_cols=151  Identities=21%  Similarity=0.227  Sum_probs=80.0

Q ss_pred             EEECCCHHH-HHHHHHHHHCCC-CCEEEECCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCC--CEEEEE
Q ss_conf             982699899-999887531045-377744256413677666889-------999855899999999985027--906999
Q gi|254781167|r   53 QIGGADISK-LVEAAKIVEDFG-YNEINLNVGCPSARVHEGSFG-------ACLMLNPDIVGDCIAAMCKAL--SIPVTV  121 (322)
Q Consensus        53 Ql~g~~p~~-~~~aa~~~~~~g-~~~idlN~GCP~~~v~~~g~G-------aaLl~~p~~~~~iv~~~~~~~--~~pvsv  121 (322)
T Consensus        76 ~l~hp~gE~a~AraA~---~~gi~~~lSt~ss~slEdVa~a~~~~~~~wfQLY~~~dr~~~~~li~RA~~aG~~alvlTv  152 (344)
T cd02922          76 KLAHPDGELNLARAAG---KHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTV  152 (344)
T ss_pred             HHCCCCHHHHHHHHHH---HCCCCEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             4328845699999999---7488657405777888999986568986699982477679999999999986998899956


Q ss_pred             EE----------ECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             86----------113456653220145543200012201210013566402577-4212276610467876667388753
Q gi|254781167|r  122 KC----------RIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSP-KDNRKIPNLDYDIVYEIKKENPDLF  190 (322)
Q Consensus       122 K~----------RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~-~~~~~~~~~~~~~i~~l~~~~~~~~  190 (322)
T Consensus       153 D~p~~G~R~rd~r~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~tw~di~~lr~~~-~~p  215 (344)
T cd02922         153 DAPVLGKRERDERLKAEEAVS-DGP---------------AGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT-KLP  215 (344)
T ss_pred             CCCCCCCCHHHHHCCCCCCCC-CCC---------------CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHC-CCC
T ss_conf             788877522666507777887-665---------------433334466316677775048889999999999866-997


Q ss_pred             CCCCCCCCCHHHHHHHHH-CCCCEEE----ECCCCCHHH
Q ss_conf             025777789989888742-0352344----122000124
Q gi|254781167|r  191 IGLNGGLEDMSQALKILP-SVDGVMI----GRAAYKNSA  224 (322)
Q Consensus       191 i~~NGdi~~~~~a~~~l~-~~dgvMi----gRga~~~P~  224 (322)
T Consensus       216 liv-KGIl~~~DA~~A~~~G~dgIiVSNHGGRqLD~~~~  253 (344)
T cd02922         216 IVL-KGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPA  253 (344)
T ss_pred             EEE-CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf             010-02577999999996599889971886212578831