HHsearch alignment for GI: 254781167 and conserved domain: cd02932
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.22 E-value=4.4e-11 Score=101.54 Aligned_cols=165 Identities=21% Similarity=0.252 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHCCCCCEEEECCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEEC--C
Q ss_conf 99999887531045377744256---------413677666889999855899999999985027--9069998611--3
Q gi|254781167|r 60 SKLVEAAKIVEDFGYNEINLNVG---------CPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL--SIPVTVKCRI--G 126 (322)
Q Consensus 60 ~~~~~aa~~~~~~g~~~idlN~G---------CP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~--~~pvsvK~Rl--G 126 (322)
T Consensus 154 ~~f~~AA~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~~vg~d~~vgvRis~~d~ 233 (336)
T cd02932 154 DAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDW 233 (336)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 99999999999839999986313747999836941167778679978999889999999999983998870689645235
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 45665322014554320001220121001356640257742122766-10467876667388753025777789989888
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPN-LDYDIVYEIKKENPDLFIGLNGGLEDMSQALK 205 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~-~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~ 205 (322)
T Consensus 234 ~~~g~~~~e~~~~a~~l~~~gvd~i~vs~G-----~~~~~~~~~~~~~~~~~~a~~ik~~~-~ipvi~~G~i~~p~~ae~ 307 (336)
T cd02932 234 VEGGWDLEDSVELAKALKELGVDLIDVSSG-----GNSPAQKIPVGPGYQVPFAERIRQEA-GIPVIAVGLITDPEQAEA 307 (336)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCC-----CCCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHH
T ss_conf 789989999999999999759978995589-----87766667778642679999999878-983999799899999999
Q ss_pred HHH-C-CCCEEEECCCCCHHHHHHHHH
Q ss_conf 742-0-352344122000124399999
Q gi|254781167|r 206 ILP-S-VDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 206 ~l~-~-~dgvMigRga~~~P~if~~I~ 230 (322)
T Consensus 308 ~l~~G~~DlV~~gR~~iadPdlp~kaA 334 (336)
T cd02932 308 ILESGRADLVALGRELLRNPYWPLHAA 334 (336)
T ss_pred HHHCCCCEEHHHHHHHHHCCCHHHHHH
T ss_conf 998799400686799997933999986