HHsearch alignment for GI: 254781167 and conserved domain: cd02932

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.22  E-value=4.4e-11  Score=101.54  Aligned_cols=165  Identities=21%  Similarity=0.252  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHCCCCCEEEECCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEEC--C
Q ss_conf             99999887531045377744256---------413677666889999855899999999985027--9069998611--3
Q gi|254781167|r   60 SKLVEAAKIVEDFGYNEINLNVG---------CPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL--SIPVTVKCRI--G  126 (322)
Q Consensus        60 ~~~~~aa~~~~~~g~~~idlN~G---------CP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~--~~pvsvK~Rl--G  126 (322)
T Consensus       154 ~~f~~AA~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~~vg~d~~vgvRis~~d~  233 (336)
T cd02932         154 DAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDW  233 (336)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             99999999999839999986313747999836941167778679978999889999999999983998870689645235


Q ss_pred             CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf             45665322014554320001220121001356640257742122766-10467876667388753025777789989888
Q gi|254781167|r  127 VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPN-LDYDIVYEIKKENPDLFIGLNGGLEDMSQALK  205 (322)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~-~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~  205 (322)
T Consensus       234 ~~~g~~~~e~~~~a~~l~~~gvd~i~vs~G-----~~~~~~~~~~~~~~~~~~a~~ik~~~-~ipvi~~G~i~~p~~ae~  307 (336)
T cd02932         234 VEGGWDLEDSVELAKALKELGVDLIDVSSG-----GNSPAQKIPVGPGYQVPFAERIRQEA-GIPVIAVGLITDPEQAEA  307 (336)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEECCC-----CCCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHH
T ss_conf             789989999999999999759978995589-----87766667778642679999999878-983999799899999999


Q ss_pred             HHH-C-CCCEEEECCCCCHHHHHHHHH
Q ss_conf             742-0-352344122000124399999
Q gi|254781167|r  206 ILP-S-VDGVMIGRAAYKNSAMLTTVD  230 (322)
Q Consensus       206 ~l~-~-~dgvMigRga~~~P~if~~I~  230 (322)
T Consensus       308 ~l~~G~~DlV~~gR~~iadPdlp~kaA  334 (336)
T cd02932         308 ILESGRADLVALGRELLRNPYWPLHAA  334 (336)
T ss_pred             HHHCCCCEEHHHHHHHHHCCCHHHHHH
T ss_conf             998799400686799997933999986