HHsearch alignment for GI: 254781167 and conserved domain: cd02932
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=91.84 E-value=0.6 Score=26.80 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=50.4
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHH--HHHCCCC----CCCCCCCCCH------HHHHHHHHHHCC-CCCCCC--CC----
Q ss_conf 014554320001220121001356--6402577----4212276610------467876667388-753025--77----
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKA--ILKGLSP----KDNRKIPNLD------YDIVYEIKKENP-DLFIGL--NG---- 195 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~--~~~g~s~----~~~~~~~~~~------~~~i~~l~~~~~-~~~i~~--NG---- 195 (322)
T Consensus 155 ~f~~AA~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~~vg~d~~vgvRis~~d~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 99999999998399999863137479998369411677786799789998899999999999839988706896452357
Q ss_pred -CCCCHHHHHHH---HH--CCCCEEEECCC
Q ss_conf -77899898887---42--03523441220
Q gi|254781167|r 196 -GLEDMSQALKI---LP--SVDGVMIGRAA 219 (322)
Q Consensus 196 -di~~~~~a~~~---l~--~~dgvMigRga 219 (322)
T Consensus 235 ~~g~~~~e~~~~a~~l~~~gvd~i~vs~G~ 264 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVDLIDVSSGG 264 (336)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 899899999999999997599789955898