HHsearch alignment for GI: 254781167 and conserved domain: cd02940
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.68 E-value=1.9e-16 Score=141.05 Aligned_cols=175 Identities=23% Similarity=0.341 Sum_probs=140.4
Q ss_pred CCCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 7846999826-998999998875310453777442564136776668899998558999999999850279069998611
Q gi|254781167|r 47 EKPLALQIGG-ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 47 e~p~~~Ql~g-~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
T Consensus 99 ~~~~i~si~~~~~~~~~~~~a~~~~~~gad~lElNiScPN-~~~~~~~g~~~~~~~~~l~~i~~~v~~~~~~Pi~vKLs- 176 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPH-GMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT- 176 (299)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECC-
T ss_conf 9737988517898789999999998718888998267889-87612345552449999999999998624786489628-
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH--------------------HHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 3456653220145543200012201210013566--------------------40257742122766104678766673
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAI--------------------LKGLSPKDNRKIPNLDYDIVYEIKKE 185 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~--------------------~~g~s~~~~~~~~~~~~~~i~~l~~~ 185 (322)
T Consensus 177 -----P~~~~i~~ia~~~~~~gadgiv~~Nt~~~~~~i~~d~~~~~~~~~~~~~~GGlSG~~---l~~~al~~v~~i~~~ 248 (299)
T cd02940 177 -----PNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPA---VKPIALRAVSQIARA 248 (299)
T ss_pred -----CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHH
T ss_conf -----871549999999998599899997666775654422356665645677778455878---899999999999996
Q ss_pred C-CCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCC-CHHHHHHHHHH
Q ss_conf 8-875302577778998988874-2035234412200-01243999999
Q gi|254781167|r 186 N-PDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAY-KNSAMLTTVDE 231 (322)
Q Consensus 186 ~-~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~-~~P~if~~I~~ 231 (322)
T Consensus 249 ~~~~i~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i~~I~~ 297 (299)
T cd02940 249 PEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCT 297 (299)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHC
T ss_conf 4899778998995999999999984998999989999809899999972