HHsearch alignment for GI: 254781167 and conserved domain: cd03322
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=94.43 E-value=0.48 Score=27.53 Aligned_cols=148 Identities=11% Similarity=0.115 Sum_probs=90.9
Q ss_pred HHHHCCCCC-CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
Q ss_conf 983027457-84699982699899999887531045377744256413677666889999855899999999985027--
Q gi|254781167|r 39 NILGFSTQE-KPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-- 115 (322)
Q Consensus 39 ~~~~~~~~e-~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-- 115 (322)
T Consensus 106 ~LLGG~~r~~i~~y~~~~~~~~~e~~~~a~~~~~~Gf~~~K~k~-----------------------~~~i~avR~~~G~ 162 (361)
T cd03322 106 QLLGGKSRDGIMVYSHASGRDIPELLEAVERHLAQGYRAIRVQL-----------------------PKLFEAVREKFGF 162 (361)
T ss_pred HHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECH-----------------------HHHHHHHHHHHCC
T ss_conf 98189778747899963889969999999988865988787452-----------------------9999999997299
Q ss_pred CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 90699986113456653220145543200012201210013566402577421227661046787666738875302577
Q gi|254781167|r 116 SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG 195 (322)
Q Consensus 116 ~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG 195 (322)
T Consensus 163 ~~~l~vDan~~~~----~~~Ai~~~~~l~~~~l~w~E----------------eP~~~~d~~~~~~l~~~~-~iPIa~gE 221 (361)
T cd03322 163 EFHLLHDVHHRLT----PNQAARFGKDVEPYRLFWME----------------DPTPAENQEAFRLIRQHT-ATPLAVGE 221 (361)
T ss_pred CCEEECCCCCCCC----HHHHHHHHHHHHHHHHHCCC----------------CCCCCCCHHHHHHHHHHC-CCCEEECC
T ss_conf 9708512556899----99999999998742021021----------------798865889999999746-99888278
Q ss_pred CCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHH
Q ss_conf 7789989888742--0352344122000124399999
Q gi|254781167|r 196 GLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 196 di~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~ 230 (322)
T Consensus 222 ~~~~~~~~~~~i~~~a~divq~d~~~~GGit~~~kia 258 (361)
T cd03322 222 VFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIA 258 (361)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCEECCHHHHHHHH
T ss_conf 7689999999998276562055666048799999999